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2020 Publications

DepartmentAuthor/sTypeReference
AGRavat, DhananjayPublicationRavat, D., M. Purucker, N. Olsen, Lunar magnetic field models from Lunar Prospector and SELENE/Kaguya along-track magnetic field gradients,  Journal of Geophysical Research: Planets (IF 3.713) Pub Date : 2020-06-16 , DOI:  10.1029/2019je006187
CoEZhu, CaigangPublication

Evan Carrico, Tengfei Sun, and Caigang Zhu, Numerical investigation of depth-sensitive diffuse reflectance and fluorescence measurements on murine subcutaneous tissue with growing solid tumors.  Biomedical Optics Express, Vol. 11, Issue 11, pp. 6311-6323 Pub Date: (2020) https://doi.org/10.1364/BOE.405321

AGKalbfleisch, TedPublication

Kalbfleisch T, Petersen JL, Tait Jr. RG, Qiu J, Basnayake V., Hackett P, Heaton MP. Using triallelic SNPs for determining parentage in North American yak (Bos grunniens) and estimating cattle (B. taurus) introgression [version 2; peer review: 2 approved]. F1000Research 2020, 9:1096 (https://doi.org/10.12688/f1000research.25803.2)

























2019 Publications

DepartmentAuthor/sTypeReference
ECEAdams, Robert JPublicationA. Pfeiffer, J. C. Young, R. J. Adams, and S. D. Gedney, ""Higher-order simulation of impressed current cathodic protection systems,"" Journal of Computational Physics, vol. 394, pp. 522-531, October 2019. doi: 10.1016/j.jcp.2019.06.008
ECEAdams, Robert JMagazine

J. C. Young, ""Higher-Order Mesh Generation Using Linear Meshes [EM Programmer's Notebook]," in IEEE Antennas and Propagation Magazine, vol. 61, no. 2, pp. 120-126, April 2019. doi: 10.1109/MAP.2019.2895599"

ECEAdams, Robert JConference Proceeding

R. J. Adams, O. T. Wilkerson, J. C. Young, I. Chowdury, and W. Thiel, "Localizing sparse direct solvers for circuit simulations," Proceedings of the 2019 IEEE/MTT-S International Microwave Symposium, pp. 128-131, 2019.

ECEAdams, Robert JConference ProceedingJ. C. Young, R. A. Pfeiffer, and R. J. Adams, "Corrosion-Related Magnetostatic Field Analysis," 2019 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, Atlanta, GA, July 8 - July 12, 2019.
ECEAdams, Robert JConference ProceedingR. J. Adams, O. T. Wilkerson, J. C. Young, and S. D. Gedney, "Binormalized Factorizations for Magnetostatic Integral Equations," 2019 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, Atlanta, GA, July 8 - July 12, 2019.

CoP

Anderson, BradPublication

T.-X. Xiang and B.D. Anderson, Effects of molecular interactions on miscibility and mobility of ibuprofen in amorphous solid dispersions with various polymers. J. Pharm. Sci., 108, 178-186 (2019)."

A&SAwuah, Samuel GPublication

Gukathasan, S.; Parkin, S.; Awuah, S. G. Cyclometalated Gold(III) Complexes Bearing DACH Ligands. Inorganic Chemistry 2019, 58, 149326-9340

A&SAwuah, Samuel GPublication

Kim, J. H.; Mertens, R. T.; Agarwal, A.; Parkin, S.; Berger, G.; Awuah, S. G. Direct intramolecular carbon(sp2)–nitrogen(sp2) reductive elimination from gold(iii). Dalton Trans. 2019, 48, 6273-6282.

A&SAwuah, Samuel GPublicationMertens, R. T., Kim, J. H., Jennings, W. C., Parkin, S., Awuah, S. G. Revisiting the reactivity of tetrachloroauric acid with N, N-bidentate ligands: structural and spectroscopic insights. Dalton Trans 2019, 48, 2093-2099"
AGBall, Barry APublication

Dini P, Kalbfleisch T, Daels P, Carossino M, El-Sheikh Ali H, Loux SC, Esteller-Vico A, Scoggin KE, Ball BA. Monoallelic gene expression; a closer look at reciprocal paternal and maternal gene interaction in equine placenta. Genome Res (submitted) 2019

AGBall, Barry APublicationDini P, Norris J, El-Sheikh Ali H, Loux SC, Carossino M, Esteller-Vico A, Bailey E, Kalbfleisch T, Daels P, Ball BA. Landscape of overlapping gene expression in the equine chorioallantois. Genes 2019, 10, 503; doi:10.3390/genes10070503
AGBall, Barry APublicationBoakari YL, El-Sheikh Ali H, Dini P, Loux SC, Fernandes CB, Scoggin KE, Esteller-Vico A, Lawrence L, Ball BA. A high protein model alters the endometrial transcriptome of mares. Genes (accepted with revisions) 2019
AGBall, Barry APublicationLoux SC, Dini P, El-Sheikh Ali H, Kalbfleisch T, Ball BA. Characterization of the placental transcriptome through mid-late gestation in the mare. Placenta (In draft) 2019
AGBall, Barry APublication

Loux SC, Fernandes CB, Dini P, Wang K, Wu X, Baxter D, Troedsson MH, Squires EL, Ball BA. Small RNA expression in the chorioallantois, endometrium and serum of mares following experimental induction of placentitis. Rep Fertil Devel 31:1144-1156, 2019

AGBall, Barry AConference Proceeding

El-Sheikh Ali H, Loux SC, Boakari Y, Fernandes CB, Esteller-Vico A, Scoggin KE, Ball BA. Transcriptomic analysis of the equine cervix during placentitis. Plant & Animal Genome Conference (PAG), January 12-16, 2019.

AGBall, Barry AConference Proceeding

El-Sheikh Ali H, Loux SC, Boakari Y, Dini P, Scoggin KE, Kalbfleisch T, Esteller-Vico A, Ball BA. Transcriptome analysis reveals the key regulators and molecular mechanisms underlying myometrial activation during equine placentitis. Society for the Study of reproduction (SSR), July 18-21, 2019.

AGBall, Barry AConference Proceeding

Loux SC, Ball BA. New insights into gestational endocrinology of the mare. Society for the Study of reproduction (SSR), July 18-21, 2019.

AGBall, Barry AConference Proceeding

Boakari YL, Loux SC, El-Sheikh Ali H, Dini P, Fernandes CB, Scoggin KE, Lawrence LM, Esteller-Vico A, Ball BA. Effects of intravenous infusion of urea on the endometrial transcriptome of mares. In: International Plant and Animal Genome, 2019, San Diego, CA. PAG XXVII, 2019.

CoEBrehm, ChristophPublication

Brehm, M.F. Barad, and C. C. Kiris “Development of Immersed Boundary Computational Aeroacoustic Prediction Capabilities for Open-Rotor Noise”, Journal of Computational Physics, 2019, Volume 388, 690- 716

CoEBrehm, ChristophPublication

O.M.F. Browne, A.P. Haas, H.F. Fasel, A. Haas, and C. Brehm “An Efficient Linear Wave Packet Tracking Strategy Method for Hypersonic Boundary-Layer Stability Prediction”, Journal of Computational Physics, Volume 380, 243-268, 2019

CoE

Brehm, ChristophPublication

O.M.F. Browne, A.P. Haas, H.F. Fasel, and C. Brehm, “A Nonlinear Wavepacket Tracking Method for 3-D Hypersonic Transition Problems”, Journal of Computational Physics, 2019, submitted 11

CoE

Brehm, ChristophPublication

A.P. Haas, O.M.F. Browne, H.F. Fasel, and C. Brehm, “A Time-Spectral Numerical Jacobian Based Lin- earized Navier-Stokes Solver For Hypersonic Boundary-Layer Stability”, Journal of Computational Physics, 2019, revision completed

CoE

Brehm, ChristophPublication

J. Boustani, M. Barad, C. Kiris, and C. Brehm, “An FD Immersed Boundary Fluid — FE Structure Inter- action Method for Thin, Highly Compliant Structures”, Journal of Computational Physics, 2019, submitted

CoE

Brehm, ChristophPublication

J. Davis, S. Ganju, S. Bailey and C. Brehm, “Effects of Rotation on Turbulent Kinetic Energy Budget in Turbulent Pipe Flows”, Journal of Fluid Mechanics, 2019, in preparation

CoE

Brehm, ChristophPublication

S. Ganju, J. Davis, S. Bailey and C. Brehm, “A Numerical Investigation of Turbulent Channel Flows with Wavy Walls: Turbulent Budgets and Reynolds Stress Tensor”, Physics of Fluids, 2019, in preparation

CoE

Brehm, ChristophPublication

C. Brehm, and N. Ashton, “An Immersed Boundary Method with a Non-Equilibrium RANS-Based Wall Model”, Journal of Computational Physics, 2019, in preparation"

CoEBrehm, ChristophConference Proceeding

Browne, S. Hasnine, and C. Brehm, “Towards Modeling and Simulation of Particulate Interactions with High-Speed Transitional Boundary-Layer Flows”, AIAA 2019-2971, incl. presentation at 2019 AIAA Aviation, 17-21 June, Dallas, TX

CoEBrehm, ChristophConference Proceeding

J. Davis, S. Ganju, S. Bailey and C. Brehm, “A DNS Study to Investigate Turbulence Suppression in Rotating Pipe Flows”, AIAA 2019-3639, incl. presentation at 2019 AIAA Aviation, 17-21 June, Dallas, TX

CoEBrehm, ChristophConference Proceeding

N. Ashton, J. Davis, and C. Brehm, “Assessment of the Elliptic Blending Reynolds Stress Model for a Rotating Turbulent Pipe Flow Using New DNS Data”, AIAA 2019-2966, incl. presentation at 2019 AIAA Aviation, 17-21 June, Dallas, TX

CoEBrehm, ChristophConference Proceeding

J. Boustani, M. Barad, C. Kiris and C. Brehm, “Fully-Coupled Fluid-Structure Interaction Simulations of a Supersonic Parachute”, AIAA 2019-3279, incl. presentation at 2019 AIAA Aviation, 17-21 June, Dallas, TX

CoEBrehm, ChristophConference Proceeding

S. Ganju, J. Davis, S. Bailey and C. Brehm, “Direct Numerical Simulations of Turbulent Channel Flows with Two- and Three-Dimensional Superimposed Sinusoidal Roughness”, AIAA 2019-3641, incl. presentation at 2019 AIAA Aviation, 17-21 June, Dallas, TX

CoEBrehm, ChristophConference Proceeding

C. Brehm, J. Davis, S. Ganju, and S. Bailey, “A Numerical Investigation of the Effects of Rotation on Turbulent Pipe Flows”, Eleventh International Symposium on Turbulence and Shear Flow Phenomena, TSFP-11, July 30 to August 2, 2019, Southampton, UK

CoEBrehm, ChristophConference Proceeding

S. Ganju, J. Davis, S. Bailey, and C. Brehm, “Direct Numerical Simulations of Turbulent Channel Flows with Sinusoidal Walls”, AIAA 2019-2141, incl. presentation at AIAA Science and Technology Forum and Exposition, 7-11 January, San Diego, CA

CoEBrehm, ChristophConference Proceeding

J. Boustani, O.M.F. Browne, J. Wenk, M. Barad, C. Kiris, and C. Brehm, “Fluid-Structure Interactions with Geometrically Nonlinear Deformations”, AIAA 2019-1896, incl. presentation at AIAA Science and Technology Forum and Exposition, 7-11 January, San Diego, CA

CoEBrehm, ChristophConference ProceedingO. Browne, and C. Brehm “Efficient Strategy for Tracking Wavepackets in Hypersonic Boundary Layers” Blue Waters Symposium, June 2-6, 2019 Sunriver, OR
A&SCrawford, Christopher BPublication

“A Lightweight Method for Real-Time Waveform Fitting with Background Noise Rejection”, A. P. Jezghani, and L. J. Broussard, C. B. Crawford, IEEE Transactions in Nuclear Physics, 2019.  (pending)

A&SCrawford, Christopher BConference Proceeding

L.J. Broussard {\it et al.}, ``Using Nab to determine correlations in unpolarized neutron decay'', {http://dx.doi.org/10.1007/s10751-018-1538-7}{Hyperfine Interact. 240, 1 (2019)}, http://arxiv.org/abs/arXiv:1812.08258}{arXiv:1812.08258}.

A&SCrawford, Christopher BConference Proceeding`Life at Low Coupling Constant,'' Seminar, University of Winnipeg, Department of Physics, Lexington, KY, 2019-02-13.
A&SDymarsky, AnatolyPublication

Mechanism of macroscopic equilibration of isolated quantum systems, Anatoly Dymarsky Phys. Rev. B 99, 224302 – Published 6 June 2019

A&SDymarsky, AnatolyPublicationNew characteristic of quantum many-body chaotic systems, Anatoly Dymarsky and Hong Liu, Phys. Rev. E 99, 010102(R) – Published 4 January 2019
Public HealthEllingson, SallyPublicationLiu J, Murali T, Yu T, Liu C, Sivakumaran TA, Moseley H, Zhulin I, Weiss H, Durbin R, Ellingson SR, Liu J, Huang B, Hallahan BJ, Horbinski C, Hodges K, Napier D, Bocklage T, Mueller J, Vanderford N, Fardo DW, Wang C, and Arnold S. Characterization of Squamous Cell Lung Cancers from Appalachian Kentucky. Cancer Epidemiology, Biomarkers & Prevention (2019) DOI: 10.1158/1055-9965.EPI-17-0984."
A&SFerland, GaryPublication

N. P. Abel, G. J. Ferland, and C. R. O’Dell. 2019. The Structure of the Orion Nebula in the Direction of θ 1 Ori C. Monthly Notices of the Royal Astronomical Society 881, 2, Article 130 (Aug 2019), 130 pages. https://doi.org/10.3847/1538-4357/ab2a6e arXiv:astro-ph.GA/1906.07779

A&SFerland, GaryPublicationGabriele Betancourt-Martinez, Hiroki Akamatsu, Didier Barret, Manuel Bautista, Sven Bernitt, Stefano Bianchi, Dennis Bodewits, Nancy Brickhouse, Gregory V. Brown, Elisa Costantini, Marcello Coreno, José R. Crespo López-Urrutia, Renata Cumbee, Megan Eckart, Gary Ferland, Fabrizio Fiore, Michael Fogle, Adam Foster, Javier Garcia, Tom Gorczyca, Victoria Grinberg, Nicolas Grosso, Liyi Gu, Ming Feng Gu, Matteo Guainazzi, Natalie Hell, Jan-Willem den Herder, Jelle Kaastra, Timothy Kallman, Julia Lee, Maurice Leutenegger, Joan Marler, Dan McCammon, Shinya Nakashima, Fabrizio Nicastro, Frits Paerels, François Pajot, Etienne Pointecouteau, Delphine Porquet, F. Scott Porter, Daniel Wolf Savin, Makoto Sawada, Chintan Shah, Aurora Simionescu, Monica de Simone, Chad Sosolik, Phillip Stancil, René Steinbrügge, and Hiroya Yamaguchi. 2019. Unlocking the Capabilities of Future High-Resolution X-ray Spectroscopy Missions Through Laboratory Astrophysics. Monthly Notices of the Royal Astronomical Society 51, 3, Article 337 (May 2019), 337 pages. arXiv:astro-ph.HE/1903.08213
A&SFerland, GaryPublicationMaryam Dehghanian, Gary Ferland, Gerard Kriss, Bradley Peterson, Francisco Guzman, Marios Chatzikos, and Peter van Hoof. 2019. Uncorrelated behavior of narrow absorption lines in NGC 5548. In American Astronomical Society Meeting Abstracts #233 (American Astronomical Society Meeting Abstracts), Vol. 233. Article 243.11, 243.11 pages.
A&SFerland, GaryPublicationM. Dehghanian, G. J. Ferland, G. A. Kriss, B. M. Peterson, S. Mathur, M. Mehdipour, F. Guzmán, M. Chatzikos, P. A. M. van Hoof, R. J. R. Williams, N. Arav, A. J. Barth, M. C. Bentz, S. Bisogni, W. N. Brandt, D. M. Crenshaw, E. Dalla Bontà, G. De Rosa, M. M. Fausnaugh, J. M. Gelbord, M. R. Goad, A. Gupta, Keith Horne, J. Kaastra, C. Knigge, K. T. Korista, I. M. McHardy, R. W. Pogge, D. A. Starkey, and M. Vestergaard. 2019. Space Telescope and Optical Reverberation Mapping Project. X. Understanding the Absorption-line Holiday in NGC 5548. Monthly Notices of the Royal Astronomical Society 877, 2, Article 119 (Jun 2019), 119 pages. https://doi.org/10.3847/1538-4357/ab1b48 arXiv:astro-ph.GA/1812.11578
A&SFerland, GaryPublicationM. Dehghanian, G. J. Ferland, B. M. Peterson, G. A. Kriss, K. T. Korista, M. Chatzikos, F. Guzman, N. Arav, G. De Rosa, M. R. Goad, M. Mehdipour, and P. A. M. Van Hoof. 2019. A wind-based unification model for NGC 5548: spectral holidays, non-disk emission, and implications for changing-look quasars. arXiv e-prints, Article arXiv:1908.07686 (Aug 2019), arXiv:1908.07686 pages. arXiv:astro-ph.GA/1908.07686
A&SFerland, GaryPublicationR. Edelson, J. Gelbord, E. Cackett, B. M. Peterson, K. Horne, A. J. Barth, D. A. Starkey, M. Bentz, W. N. Brandt, M. Goad, M. Joner, K. Korista, H. Netzer, K. Page, P. Uttley, S. Vaughan, A. Breeveld, S. B. Cenko, C. Done, P. Evans, M. Fausnaugh, G. Ferland, D. Gonzalez-Buitrago, J. Gropp, D. Grupe, J. Kaastra, J. Kennea, G. Kriss, S. Mathur, M. Mehdipour, D. Mudd, J. Nousek, T. Schmidt, M. Vestergaard, and C. Villforth. 2019. The First Swift Intensive AGN Accretion Disk Reverberation Mapping Survey. Monthly Notices of the Royal Astronomical Society 870, 2, Article 123 (Jan 2019), 123 pages. https://doi.org/10.3847/1538-4357/aaf3b4 arXiv:astro-ph.HE/1811.07956
A&SFerland, GaryPublicationGary J. Ferland. 2019. Einstein’s biggest mistake? arXiv e-prints, Article arXiv:1905.09276 (Apr 2019), arXiv:1905.09276 pages. arXiv:physics.histph/1905.09276
A&SFerland, GaryPublicationF. Guzmán, M. Chatzikos, P. A. M. van Hoof, Dana S. Balser, M. Dehghanian, N. R. Badnell, and G. J. Ferland . 2019. H-, He-like recombination spectra - III. n-changing collisions in highly excited Rydberg states and their impact on the radio, IR, and optical recombination lines. Monthly Notices of the Royal Astronomical Society 486, 1 (Jun 2019), 1003–1018. https://doi.org/10.1093/mnras/stz857 arXiv:astro-ph.GA/1903.05730
A&SFerland, GaryPublicationFrancisco Guzman Fulgencio, Marios Chatzikos, Dana Balser, Peter van Hoof, Maryam Dehghanian, Otho Ulrich, and Gary Ferland. 2019. The impact of inaccurate collisional excitation rates on radio recombination line observations. In American Astronomical Society Meeting Abstracts #2333, (American Astronomical Society Meeting Abstracts), Vol. 233. Article 412.08, 412.08 pages.
A&SFerland, GaryPublicationG. A. Kriss, G. De Rosa, J. Ely, B. M. Peterson, J. Kaastra, M. Mehdipour, G. J. Ferland, M. Dehghanian, S. Mathur, R. Edelson, K. T. Korista, N. Arav, A. J. Barth, M. C. Bentz, W. N. Brandt, D. M. Crenshaw, E. Dalla Bontà, K. D. Denney, C. Done, M. Eracleous, M. M. Fausnaugh, E. Gardner, M. R. Goad, C. J. Grier, Keith Horne, C. S. Kochanek, I. M. McHardy, H. Netzer, A. Pancoast, L. Pei, R.W. Pogge, D. Proga, C. Silva, N. Tejos, M. Vestergaard, S. M. Adams, M. D. Anderson, P. Arévalo, T. G. Beatty, E. Behar, V. N. Bennert, S. Bianchi, A. Bigley, S. Bisogni, R. Boissay-Malaquin, G. A. Borman, M. C. Bottorff, A. A. Breeveld, M. Brotherton, J. E. Brown, J. S. Brown, E. M. Cackett, G. Canalizo, M. Cappi, M. T. Carini, K. I. Clubb, J. M. Comerford, C. T. Coker, E. M. Corsini, E. Costantini, S. Croft, K. V. Croxall, A. J. Deason, A. De Lorenzo-Cáceres, B. De Marco, M. Dietrich, L. Di Gesu, J. Ebrero, P. A. Evans, A. V. Filippenko, K. Flatland, E. L. Gates, N. Gehrels, S. Geier, J. M. Gelbord, L. Gonzalez, V. Gorjian, D. Grupe, A. Gupta, P. B. Hall, C. B. Henderson, S. Hicks, E. Holmbeck, T. W. S. Holoien, T. A. Hutchison, M. Im, J. J. Jensen, C. A. Johnson, M. D. Joner, S. Kaspi, B. C. Kelly, P. L. Kelly, J. A. Kennea, M. Kim, S. C. Kim, S. Y. Kim, A. King, S. A. Klimanov, Y. Krongold, M. W. Lau, J. C. Lee, D. C. Leonard, Miao Li, P. Lira, C. Lochhaas, Zhiyuan Ma, F. MacInnis, M. A. Malkan, E. R. Manne-Nicholas, G. Matt, J. C. Mauerhan, R. McGurk, C. Montuori, L. Morelli, A. Mosquera, D. Mudd, F. Müller-Sánchez, S. V. Nazarov, R. P. Norris, J. A. Nousek, M. L. Nguyen, P. Ochner, D. N. Okhmat, S. Paltani, J. R. Parks, C. Pinto, A. Pizzella, R. Poleski, G. Ponti, J. U. Pott, S. E. Rafter, H. W. Rix, J. Runnoe, D. A. Saylor, J. S. Schimoia, K. Schnülle, B. Scott, S. G. Sergeev, B. J. Shappee, I. Shivvers, M. Siegel, G. V. Simonian, A. Siviero, A. Skielboe, G. Somers, M. Spencer, D. Starkey, D. J. Stevens, H. I. Sung, J. Tayar, K. G. Teems, T. Treu, C. S. Turner, P. Uttley, J. . Van Saders, L. Vican, C. Villforth, Jr. Villanueva, S., D. J. Walton, T. Waters, Y. Weiss, J. H. Woo, H. Yan, H. Yuk, W. Zheng, W. Zhu, and Y. Zu. 2019. Space Telescope and Optical Reverberation Mapping Project. VIII. Time Variability of Emission and Absorption in NGC 5548 Based on Modeling the Ultraviolet Spectrum. Monthly Notices of the Royal Astronomical Society 881, 2, Article 153 (Aug 2019), 153 pages. https://doi.org/10.3847/1538-4357/ab3049  arXiv:astro-ph.GA/1907.03874
A&SFerland, GaryPublicationSibasish Laha, Randall Smith, Panayiotis Tzanavaris, Tim Kallman, Sylvain Veilleux, Francesco Tombesi, Gerard Kriss, Matteo Guainazzi, Massimo Gaspari, Jelle Kaastra, Alex Markowitz, Mike Crenshaw, Ehud Behar, Keigo Fukumura, Anna Lia Longinotti, Agata Rozanska, Jacobo Ebrero, Gary Ferland, Claudio Ricci, Chris Done, Daniel Proga, Mitchell Revalski, and Andrey Vayner. 2019. The physics and astrophysics of X-ray outflows from Active Galactic Nuclei. Monthly Notices of the Royal Astronomical Society 51, 3, Article 75 (May 2019), 75 pages. arXiv:astro-ph.GA/1903.06748
A&SFerland, GaryPublicationH. Landt, M. J. Ward, D. Kynoch, C. Packham, G. J. Ferland, A. Lawrence, J. U. Pott, J. Esser, K. Horne, D. A. Starkey, D. Malhotra, M. M. Fausnaugh, B. M. Peterson, R. J. Wilman, R. A. Riffel, T. Storchi-Bergmann, A. J. Barth, C. Villforth, and H. Winkler. 2019. The first spectroscopic dust reverberation programme on active galactic nuclei: the torus in NGC 5548. Monthly Notices of the Royal Astronomical Society (Aug 2019), 2141. https://doi.org/10.1093/mnras/stz2212 arXiv:astro-ph.GA/1908.01627
A&SFerland, GaryPublicationV. Olivares, P. Salomé, F. Combes, S. Hamer, P. Guillard, M. D. Lehnert, F. Polles, R. S. Beckmann, Y. Dubois, M. Donahue, A. Edge, A. C. Fabian, B. McNamara, T. Rose, H. Russell, G. Tremblay, A. Vantyghem, R. E. A. Canning, G. Ferland , B. Godard, M. Hogan, S. Peirani, and G. Pineau des Forets. 2019. Ubiquitous cold and massive filaments in cool core clusters. arXiv e-prints, Article  arXiv:1902.09164 (Feb 2019), arXiv:1902.09164 pages.  arXiv:astro-ph.GA/1902.09164
A&SFerland, GaryPublicationTom Rose, A. C. Edge, F. Combes, M. Gaspari, S. Hamer, N. Nesvadba, H. Russell, G. R. Tremblay, S. A. Baum, C. O’Dea, A. B. Peck, C. Sarazin, A. Vantyghem, M. Bremer, M. Donahue, A. C. Fabian, G. Ferland, B. R. McNamara, R. Mittal, J. B. R. Oonk, P. Salomé, A. M. Swinbank, and M. Voit. 2019.  Deep and narrow CO absorption revealing molecular clouds in the Hydra-A brightest cluster galaxy. Monthly Notices of the Royal Astronomical Society 485, 1 (May 2019), 229–238. https://doi.org/10.1093/mnras/stz406 arXiv:astro-ph.GA/1902.01863
A&SFerland, GaryPublicationR. T. Smyth, C. A. Ramsbottom, F. P. Keenan, G. J. Ferland , and C. P. Ballance. 2019. Towards converged electron-impact excitation calculations of low-lying transitions in Fe II. Monthly Notices of the Royal Astronomical Society 483, 1 (Feb 2019), 654–663. https://doi.org/10.1093/mnras/sty3198 5
CoEFox, JamesPublication

Husic A., J. Fox, E. Adams, W. Ford, C. Agouridis, J. Currens, and J. Backus, (2019). Nitrate Pathways, Processes, and Timing in an Agricultural Karst System: Development and Application of a Numerical Model, Water Resources Research, AGU, accepted, in press. DOI: 10.1029/2018WR023703.

CoEFox, JamesPublicationMahoney D.T., N. Al Aamery, J.F. Fox, B. Riddle, W.I. Ford, and Y.T. Wang, (2019). Equilibrium sediment exchange in the earth’s critical zone: evidence from sediment fingerprinting with stable isotopes and watershed modelling, Journal of Soils and Sediments, Springer, DOI: 10.1007/s11368-018-2208-8. http://link.springer.com/article/10.1007/s11368-018-2208-8
CoEFox, JamesConference ProceedingMahoney D.T., Al Aamery N., Fox J.F., and Husic A. 2019. Advancement in watershed sediment transport modelling using dynamic three-dimensional sediment connectivity prediction. 2019 World Environmental & Water Resources Congress, EWRI, ASCE, May 19-23, 2019, Pittsburgh, Pennsylvania, USA.
CoEFox, JamesConference Proceeding

Husic A., Fox J.F., Al Aamery N., Ford W.I., Agourdis C., Backus J. 2019. Sediment nitrogen stable isotopes and numerical modeling show hot moments, hot spots, and environmental drivers in the surficial fine-grained laminae of karst beds. 2019 World Environmental & Water Resources Congress, EWRI, ASCE, May 19-23, 2019, Pittsburgh, Pennsylvania, USA.

CoEFox, JamesConference ProceedingAl Aamery N., Mahoney D.T. and Fox J. 2019. Climate change impacts on sediment transport in a lowland watershed system: controlling processes and projection. Kentucky Water Resources Annual Symposium, Lexington, KY, March 25, 2019.
CoEFox, JamesConference ProceedingMahoney T., Al-Aamery N., Fox J., Clare E., Dunlop T., Day S. and Pike J. 2019. Advancement in watershed and sediment transport modelling using dynamic lateral, longitudinal, and vertical sediment (dis)connectivity prediction. Kentucky Water Resources Annual Symposium, Lexington, KY, March 25, 2019.
CoEGriffioen, JamesConference ProceedingSatrio Husodo, Jacob Chappell, Vikram Gazula, Lowell Pike, James Griffioen, ""Slicing and Dicing OpenHPC Infrastructure: Virtual Clusters in OpenStack"", To appear in the Practice and Experience in Advanced Research Computing Conference 2019 (PEARC'19), July 2019
CoEGrulke, EricPublicationE. A. Grulke, M. J. Beck, R. A. Yokel, J. M. Unrine, U. M. Graham and M. L. Hancock, Surface-controlled dissolution rates: a case study of nanoceria in carboxylic acid solutions, Environ. Sci.: Nano, 2019, DOI: 10.1039/c9en00222g, Ahead of Print
CoEGutierrez Soto, Mariantonieta Conference Proceeding

Baumann, C. Weathley, M. Gutierrez Soto (2019) “Origami-Inspired Additive Manufacturing: Architectural Aerodynamics in Hurricane Wind Loads"" Showcase of Undergraduate Scholars, University of Kentucky. (24 April 2019). Lexington, KY.

CoEGutierrez Soto, Mariantonieta Conference ProceedingA. Bellamy, J. Boustani, C. Brehm, M. Gutierrez Soto (2019) “Towards resilient adaptive origami-inspired diagrid building envelope"" Proc. SPIE 10967, Active and Passive Smart Structures and Integrated Systems XII, 1096713 (27 March 2019). Denver, CO. DOI: 10.1117/12.2514132
CoEHoagg, Jesse BPublication

A. S. Mousavi, X. Zhang, T. M. Seigler, and J. B. Hoagg, “Characteristics that make linear time- invariant dynamics systems difficult for humans to control,” IEEE Transactions on Human-Machine Systems, (under review, submitted June 2019).

CoEHoagg, Jesse BPublicationS. A. S. Mousavi, F. Matveeva, X. Zhang, T. M. Seigler, and J. B. Hoagg, “The impact of command- following task on human-in-the-loop control behavior,” IEEE Transactions on Cybernetics, (under review, submitted May 2019).
CoEHoagg, Jesse BPublicationS. A. S. Mousavi, X. Zhang, T. M. Seigler, and J. B. Hoagg, “Subsystem identification of feedback and feedforward systems with delay,” International Journal of Control, (under review, submitted April 2019).
CoEHoagg, Jesse BPublicationX. Zhang, T. M. Seigler, and J. B. Hoagg, “The impact of nonminimum-phase zeros on human-in- the-loop control systems,” IEEE Transactions on Cybernetics, (under review, submitted March 2019).
CoEHoagg, Jesse BPublicationA. J. S. Sheffler, S. A. S. Mousavi, E. Hellstrom, M. Jankovic, M.A. Santillo, T. M. Seigler, and J. B. Hoagg. “Effects of reference-command preview as humans learn to control dynamics systems,” Proc. IEEE Int. Conf. Syst., Man, Cyb., Bari, Italy, October 2019 (accepted).
CoEIonel, DanPublication

Gong, H., Rallabandi, V., and Ionel, D. M., ""Load Variation Reduction by Aggregation in a Community of Rooftop PV Residences"", Proceedings, IEEE PESGM 2019, Atlanta, GA, 4p (Aug 2019)

CoEIonel, DanPublicationTaran, N., Rallabandi, V., and Ionel, D. M., “WAVED: A Coreless Axial Flux PM Motor for Drive Systems with Constant Power Operation”, Proceedings, IEEE ITEC 2019, Novi, MI, 6p (Jun 2019)
CoEIonel, DanPublicationTaran, N., Rallabandi, V., Ionel, D. M., Heins, G., Patterson, D., and Zhou, P., “Design Optimization of Electric Machines with 3D FEA and a New Hybrid DOE-DE Numerical Algorithm”, Proceedings, IEEE IEMDC 2019, San Diego, CA, 7p (May 2019)
CoEIonel, DanPublicationTaran, N., Rallabandi, V., Ionel, D. M., Heins, G., and Patterson, D., “A Comparative Study of Methods for Calculating AC Winding Losses in Permanent Magnet Machines”, Proceedings, IEEE IEMDC 2019, San Diego, CA, 7p (May 2019)
CoEIonel, DanPublicationTaran, N., Rallabandi, V., Ionel, D. M., Zhou, P., Thiele, M., and Heins, G., “A Systematic Study on the Effects of Dimensional and Materials Tolerances on PM Synchronous Machines based on the IEEE Std 1812”, IEEE Transactions on Industry Applications, Vol. 55, No. 2, pp. 1360-1371 doi: 10.1109/TIA.2018.2877144, 10p (2019)
CoEIonel, DanPublicationRallabandi, V., Taran, N., Ionel, D. M., and Zhou, P., “Inductance Testing for IPM Synchronous Machines According to the New IEEE Std 1812 and Typical Laboratory Practices”, IEEE Transactions on Industry Applications, Vol. 55, No. 3, pp. 2649-2659 doi: 10.1109/TIA.2019.2897668 (2019)
CoEIonel, DanConference Proceeding"Virtual Power Plant (VPP) for DER Aggregation and DR Optimal Controls""; Sponsor: Tennessee Valley Authority (TVA); Jul 2019 - Aug 2020; PI: Dan M. Ionel
CoEJacobs, NathanPublication

Bessinger Z., Jacobs N. 2019. A Generative Model of Worldwide Facial Appearance. In: IEEE Winter Conference on Applications of Computer Vision (WACV).

CoEJacobs, NathanPublicationWeilian Song, Tawfiq Salem, Hunter Blanton, and Nathan Jacobs. Remote Estimation of Free-Flow Speeds. In IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2019.
CoEJacobs, NathanPublicationMihail RP., Liang G., Jacobs N. 2019. Automatic Hand Skeletal Shape Estimation from Radiographs. IEEE Transactions on NanoBioscience.
AGKalbfleisch, TedPublication

Dini P, Norris J, El-Sheikh Ali H, Loux SC, Carossino M, Esteller-Vico A, Bailey E, Kalbfleisch T, Daels P and Ball BA, Landscape of Overlapping Gene Expression in The Equine Placenta, Genes 2019, 10(7), 503; https://doi.org/10.3390/genes10070503

AGKalbfleisch, TedPublicationCarossino M, Dini P, Kalbfleisch T, Loynachan AT, Canisso IF, Cook FR, Timony PJ, Balasuriya UBR “Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis”, PLOS Pathogens, 2019 Accepted
A&SKaul, RibhuPublication

Spin-S designer hamiltonians and the square lattice S=1 Haldane nematic"", Nisheeta Desai, Ribhu K. Kaul. https://arxiv.org/abs/1904.09629 accepted in PRL (2019)

A&SKaul, RibhuPublicationKagome model for a Z2 quantum spin liquid"", Matthew S. Block, Jonathan D'Emidio, Ribhu K. Kaul. https://arxiv.org/abs/1906.06246 submitted to PRL (2019)"
A&SKekenes-Huskey, Pete Publication

Increasing Salt Rejection of Polybenzimidazole Nanofiltration Membranes via the Addition of Immobilized and Aligned Aquaporins. Wagh P, Zhang X, Blood R, Kekenes-Huskey PM, Rajapaksha P, Wei Y, Escobar IC. Processes (Basel). 2019 Feb;7(2). pii: 76. doi: 10.3390/pr7020076. Epub 2019 Feb 3.

A&SKekenes-Huskey, Pete PublicationA Matched-Filter-Based Algorithm for Subcellular Classification of T-System in Cardiac Tissues. Colli DF, Blood SR, Sankarankutty AC, Sachse FB, Frisk M, Louch WE, Kekenes-Huskey PM. Biophys J. 2019 Apr 23;116(8):1386-1393. doi: 10.1016/j.bpj.2019.03.010. Epub 2019 Mar 22.3.
A&SKekenes-Huskey, Pete PublicationThermodynamics of Cation Binding to the Sarcoendoplasmic Reticulum Calcium ATPase Pump and Impacts on Enzyme Function. Sun B, Stewart BD, Kucharski AN, Kekenes-Huskey PM. J Chem Theory Comput. 2019 Apr 9;15(4):2692-2705. doi: 10.1021/acs.jctc.8b01312. Epub 2019 Mar 13.
BELamarche, Carlos E Publication

Harding, M., and C. Lamarche, 2019. A Panel Quantile Approach to Attrition Bias in Big Data: Evidence from a Randomized Experiment. Journal of Econometrics, 211, pp. 61-82

BELamarche, Carlos E PublicationHarding, M., and C. Lamarche, 2019. Penalized Estimation of a Quantile Count Model for Panel Data, Annals of Economics and Statistics, 134, pp. 177-206
BELamarche, Carlos E PublicationJung, H., Kosmopoulou, G., C. Lamarche, and R. Sicotte, 2019. Strategic Bidding and Contract Renegotiation. International Economic Review, 60, pp. 801-820
BELamarche, Carlos E Conference ProceedingHarding, M., C. Lamarche and M. H. Pesaran 2019. Common Correlated Effects Estimation of Heterogeneous Dynamic Panel Quantile Regression Models (submitted)
BELamarche, Carlos E Conference ProceedingHarding, M., C. Lamarche, and C. Muris, 2019, Estimation of a a Factor-Augmented Linear Panel Data Model with Applications Using Student Achievement Data (submitted)"
A&SLinnen, CatherinePublication

Papers in preparation and nearing submission:  Lindstedt, C., M. Jones**, R. Bagley*, S. Calhim and C.R. Linnen. Spatially varying selection shapes geographical variation in carotenoid-based warning coloration in Neodiprion sawflies. (pending) 2019

A&SLinnen, CatherinePublication

Herrig, D.K.***, K.L. Vertacnik*, A. Sosso***, and C.R. Linnen. Testing the adaptive decoupling hypothesis using transcriptomes of a hypermetaphorphic and sexually dimorphic insect. (pending) 2019

A&SLinnen, CatherineConference Proceeding

Contributed papers at conferences (***postdocs, **undergrads, *grad students): 2019 Evolution meeting (Providence, RI) “Haplodiploidy leads to heterogeneous genomic divergence during speciation with gene flow” (*E. Bendall, V. Sousa, and C. Linnen) [talk: selected for Hamilton Award Symposium]

A&SLinnen, CatherineConference Proceeding2019 Evolution meeting (Providence, RI) “Testing the adaptive decoupling hypothesis using transcriptomes of a hypermetamorphic insect” (***D. Herrig and C. Linnen) [talk]
A&SLinnen, CatherineConference Proceeding2019 Evolution meeting (Providence, RI) “Surprisingly static gene family evolution in a pair of ecological specialists” (*K. Vertacnik and C. Linnen) [talk]
A&SLinnen, CatherineConference Proceeding2019 Evolution meeting (Providence, RI) “Genetics and ecology of warning coloration variation in pine sawfly larvae” (C. Lindstedt, *R. Bagley, S. Calhim, *M. Jones and C. Linnen) [talk]
A&SLinnen, CatherineConference Proceeding2019 Gordon Speciation Conference (Ventura, CA) “Haplodiploidy leads to heterogeneous genomic divergence during speciation with gene flow” (*E. Bendall, V. Sousa, and C. Linnen) [poster]
A&SLinnen, CatherineConference Proceeding2019 Gordon Speciation Symposium (Ventura, CA) “Haplodiploidy leads to heterogeneous genomic divergence during speciation with gene flow” (*E. Bendall, V. Sousa, and C. Linnen) [invited talk]
CoPLodder, RobertPublication

Mohammad Madjid, Payam Safavi-Naeini, and Robert Lodder, High prevalence of cholesterol-rich atherosclerotic lesions in ancient mummies: A near-infrared spectroscopy study. American Heart Journal, in press, 2019.

CoPLodder, RobertPublicationAnne D. Brooks, Robert A. Lodder, Nonparametric Approach to Weak Signal Detection in the Search for Extraterrestrial Intelligence, Springer Lecture Notes in Computer Science, International Conference on Computational Science, pp. 3-15. Springer, Cham, 2019, in press. DOI:10.1007/978-3-030-22747-0_1
A&SLynn, Burt CPublicationK.R. Dean, B.C. Lynn, “Monolignol Lithium Cation Basicity Estimates and Lithium Adduct Ion Optimized Geometries” In Press, Int. J Mass Spectrom. 442, 109-116 (2019).
BEMa, LalaPublication

Ma, Lala. “Learning in a Hedonic Framework: Valuing Brownfield Remediation.” 2019. Forthcoming at International Economic Review. 


BEMa, LalaPublicationBakkensen, Laura and Lala Ma. 2019. “Distributional Impacts of Public Flood Insurance Reform.” Under Reivew.
CoEMartin, AlexandrePublication

Duzel, U., Schroeder, O. M., Zhang, H., and Martin, A., “Numerical simulation of an arc jet test section,” Journal of Thermophysics and Heat Transfer, 2019, Submitted (Control ID 2019-01-T5722). Accepted

CoEMartin, AlexandrePublicationRostkowski, P., Venturi, S., Omidy, A. D., Weng, H., Martin, A., and Panesi, M., “Calibration and uncertainty quantification of vista ablator material database using bayesian inference,” Journal of Thermophysics and Heat Transfer, vol. 33, no. 2, pp. 356–369, 2019. doi: 10.2514/1.T5396.
CoEMartin, AlexandrePublicationZhang, H., Martin, A., and Wang, G., “Numerical analysis of time accuracy of a primitive variable-based formulation of the conservative form of the governing equations for compressible flows,” International Journal of Computational Fluid Dynamics, vol. 33, no. 1-2, pp. 1–9, 2019, In press. doi: 10.1080/10618562.2018.1549730.
CoEMartin, AlexandreConference Proceeding

Fu, R., Roger, J., McDaniel, S. M., Wenk, J. F., and Martin, A., “Numerical investiga- tion of nonlinear structural responses in ablation problem,” in 48th AIAA Thermophysics Conference, Accepted (Control ID 3131909), Dallas, TX, 2019.                                                                                                     

CoEMartin, AlexandreConference ProceedingFu, R., Setter, C., Roger, J., Weng, H., and Martin, A., “Sensitivity analysis in material response for ablation problem,” in 48th AIAA Thermophysics Conference, Accepted (Control ID 3131682), Dallas, TX, 2019.
CoEMartin, AlexandreConference ProceedingSetters, C. E., Fu, R., and Martin, A., “Modeling thin layers of materials in the kentucky aero-thermal solver material response module,” in 48th AIAA Thermophysics Conference, Accepted (Control ID 3133799), Dallas, TX, 2019.
CoEMartin, AlexandreConference ProceedingWeng, H. and Martin, A., “Fiberform oxidation in a flow tube using a universal solver,” in 57th AIAA Aerospace Sciences Meeting, AIAA Paper 2019-1282, San Diego, CA, 2019. doi: 10.2514/6.2019-1282.
A&SMcLetchie, D. NicholasPublicationMarks, R. A., Smith J. J., Cronk Q., Grassa C.J., McLetchie DN, 2019 Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance. Scientific Reports.    https://rdcu.be/bHgMC
A&SMcLetchie, D. NicholasConference ProceedingManuscript - The dehydration-rehydration transcriptome of Marchantia inflexa provides insight into intraspecific variation in dehydration tolerance. Rose A. Marks, Jeramiah J. Smith, and D. Nicholas McLetchie 2019
A&SMcLetchie, D. NicholasConference ProceedingDissertation - Intraspecific variation in dehydration tolerance: insights from the tropical plant Marchantia inflexa.  By:Rose Marks 2019 2017    Rose A. Marks* and D. Nicholas Mcletchie. Dehydration tolerance in a tropical liverwort: genomic patterns. XIX International Botanical Congress, Shenzhen, China.
CoMMoseley, Hunter Publication

Joshua M. Mitchell, Robert M. Flight, and Hunter N.B. Moseley. ""Small Molecule Isotope Resolved Formula Enumeration: a Methodology for Assigning Isotopologues and Metabolites in Fourier Transform Mass Spectra"" Analytical Chemistry (accepted).

CoMMoseley, Hunter PublicationJoshua M. Mitchell, Robert M. Flight, and Hunter N.B. Moseley. ""Small Molecule Isotope Resolved Formula Enumeration: a Methodology for Assigning Isotopologues and Metabolites in Fourier Transform Mass Spectra"" ChemRxiv preprint 7609205 (2019).
CoMMoseley, Hunter PublicationJoshua M. Mitchell and Hunter N.B. Moseley. ""Deriving Accurate Lipid Classification based on Molecular Formula"" BioRxiv preprint 572883 (2019)."
Public HealthNagarajan, RadhaConference Proceeding

"AMIA 2019 Informatics Summit Workshops, Big Data” March 25 – 28, 2019 Chicago, IL https://www.amia.org/summit2019/workshops"

AGRavat, DhananjayConference ProceedingRavat, D., 2019, Lunar Magnetic Field Mapping and Interpretation: New Strategies and Results (Invited), The Core of the Moon workshop, May 20-22, 2019, Palais du Pharo, Marseille, France
CoERenfro, Michael WPublication

Grib, S. W. and Renfro, M. W. (2019). Energy analysis of unsteady negative edge flames in a periodic flow. Combustion and Flame, in review.

CoERenfro, Michael WPublicationGrib, S. W., Owens, T. C. and Renfro, M. W. (2019). Stabilization of a steady premixed jet in vitiated coflow. AIAA Journal, to be submitted within 1 month.
CoERenfro, Michael WConference Proceeding

Owens, T. C., Grib, S. W. and Renfro, M. W. (2019). Flame stability for a premixed jet in vitiated coflow. 44th Dayton-Cincinnati Aerospace Sciences Symposium, Dayton, OH.

CoERenfro, Michael WConference ProceedingGrib, S. W. and Renfro, M. W. (2019). Numerical study of unsteady negative edge flames in a periodic flow. Proceedings of the 11th U.S. National Combustion Meeting, The Combustion Institute, Pasadena, CA.
CoERenfro, Michael WConference ProceedingOwens, T. C., Grib, S. W., and Renfro, M. W. (2019). Flame stability for a premixed jet in vitiated coflow. Proceedings of the 11th U.S. National Combustion Meeting, The Combustion Institute, Pasadena, CA.
A&SRisko, ChadPublication

Even-Odd Alkyl Chain-Length Alternation Regulates Oligothiophene Crystal Structure. E.K. Burnett, Q. Ai, B.P. Cherniawski, S.R. Parkin, C. Risko & A.L. Briseno. Chemistry of Materials (2019), in press.

A&SRisko, ChadPublicationNon-Covalent Close Contacts in Fluorinated Thiophene-Phenylene-Thiophene Conjugated Units: Understanding the Nature and Dominance of O···H versus S···F and O···F Interactions towards the Control of Polymer Conformation. T. Kharandiuk, E.J. Hussien, J. Cameron, R. Petrina, N.J. Findlay, R. Naumov, W.T. Klooster, S.J. Coles, Q. Ai, S. Goodlett, C. Risko & P.J. Skabara. Chemistry of Materials (2019), Article ASAP. DOI: 10.1021/acs.chemmater.9b01886.
A&SRisko, ChadPublicationEnhancing CO2 Absorption for Post-Combustion Carbon Capture via Zinc-based Biomimetic Catalysts in Industrially Relevant Amine Solutions. L.R. Widger, M. Sarma, R.A. Kelsey, C. Risko, C.A. Lippert, S.R. Parkin & K. Liu. International Journal of Greenhouse Gas Control (2019) 85, 156-165. DOI: 10.1016/j.ijggc.2019.04.002
A&SRisko, ChadPublicationOrganic Semiconductors Derived from Dinaphtho-fused s-indacenes: How Molecular Structure and Film Morphology Influence Thin-Film Transistor Performance. A. Zeidell, L. Jennings, C. Frederickson, Q. Ai, J. Dressler, L. Zakharov, C. Risko, M.M. Haley & O.D. Jurchescu. Chemistry of Materials (2019) Article ASAP. DOI: 10.1021/acs.chemmater.9b01436
A&SRisko, ChadPublicationImpact of Atomistic Substitution on Thin-Film Structure and Charge Transport in a Germanyl-ethynyl Functionalized Pentacene. J.C. Sorli, Q. Ai, D.B. Granger, K. Gu, S. Parkin, K. Jarolimek, N. Telesz, J.E. Anthony, C. Risko & Y.L. Loo. Chemistry of Materials (2019) Article ASAP. DOI: 10.1021/acs.chemmater.9b00546
A&SRisko, ChadPublicationTriperyleno [3,3,3]propellane triimides: Achieving a New Generation of Quasi-D3h Symmetric Nanostructures in Organic Electronics. L. Lv, J. Roberts, C. Xiao, Z. Jia, W. Jiang, G. Zhang, C. Risko & L. Zhang. Chemical Science (2019) 10, 4951-4958. DOI: 10.1039/C9SC00849G
A&SRisko, ChadPublicationA NIR Absorbing Indolizine-Porphyrin Push-Pull Dye for Dye-Sensitized Solar Cells. H. Cheema, A. Baumann, E.K. Loya, P. Brogdon, L.E. McNamara, C. Carpenter, N.I. Hammer, S. Mathew, C. Risko & J.H. Delcamp. ACS Applied Materials & Interfaces (2019) 11, 16474-16489. DOI: 10.1021/acsami.8b21414
A&SRisko, ChadPublicationOxidation Pathways Involving a Sulfide-Endcapped Donor–Acceptor–Donor π-Conjugated Molecule and Antimony (V) Chloride. S. Chaudhry, S.M. Ryno, M. Zeller, D.R. McMillin, C. Risko & J. Mei. Journal of Physical Chemistry B (2019) 123, 3866-3874. DOI: 10.1021/acs.jpcb.9b01389
A&SRisko, ChadPublicationDeconstructing the Behavior of Donor-Acceptor Copolymers in Solution & the Melt: The Case of PTB7. S.M. Ryno & C. Risko. Physical Chemistry Chemical Physics (2019) 21, 7802-7813. DOI: 10.1039/C9CP00777F
A&SRisko, ChadPublicationBis(tercarbazole) Pyrene and Tetrahydropyrene Derivatives: Photophysical and Electrochemical Properties, Theoretical Modeling, and OLEDs. B.R. Kaafarani, T.H. El-Assaad, W.A. Smith, S.M. Ryno, F. Hermerschmidt, J. Lyons, D. Patra, B. Wex, E. List-Kratochvil, C. Risko, S. Barlow & S.R. Marder. Journal of Materials Chemistry C (2019) Advance Article. DOI: 10.1039/C8TC06266H
A&SRisko, ChadPublicationChemical Stabilities of the Lowest Triplet State in Aryl Sulfones and Aryl Phosphine Oxides Relevant to OLED Applications. H. Li, M. Hong, A. Scarpaci, X. He, C. Risko, J.S. Sears, S. Barlow, P. Winget, S.R. Marder, D. Kim & J.L. Brédas. Chemistry of Materials (2019) 3, 1507-1519. DOI: 10.1021/acs.chemmater.8b04235
A&SRisko, ChadPublicationOrgnanometallic Hydride-Transfer Agents as Reductants for Organic Semiconductor Molecules. S. Zhang, K. Moudgil, E. Jucov, C. Risko, T.V. Timofeeva, S.R. Marder & S. Barlow. Inorganica Chimica Acta (2019) 489, 67-77. DOI: 10.1016/j.ica.2019.02.003
CoEShao, QingConference Proceeding

Effect of Electric Field on Competitive Associations in Zwitterionic Electrolytes: “A Molecular Simulation Study” (https://aiche.confex.com/aiche/2019/meetingapp.cgi/Paper/559385); 

CoEShao, QingConference ProceedingPoster on the 4th International Conference on Bioinspired and Zwitterionic Materials:  “Molecular Simulations of Zwitterionic Electrolytes for Lithium Ion Batteries” 06/2019
A&SShlosman, IsaacPublication

Angela Collier, Isaac Shlosman and Clayton Heller, ""Dark Matter Bars in Spinning Haloes,"" MNRAS, in press. 08/2019

A&SShlosman, IsaacPublicationSadoun, R., Romano-Diaz, E., Shlosman, I., Zheng, Z., ``Lyman alpha Properties of Simulated Galaxies in Overdense Regions:  Effects of Galactic Winds at z > 6,'' MNRAS, 484, 4601 (2019). 
A&SSmith, Jeramiah JPublication

Marks RA, Smith JJ, Cronk Q, Grassa CJ, McLetchie DN. Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance. Sci Rep. 2019 Jun 19;9(1):8722.

A&SSmith, Jeramiah JPublicationSmith JJ*, Timoshevskaya N, Timoshevskiy VA, Keinath MC, Hardy D, Voss SR (2019) A chromosome-scale assembly of the axolotl genome. Genome Research, 29: 317-324.
AGTsyusko, OlgaPublicationAnye Wamucho, Jason M. Unrine, Troy J. Kieran,Travis C. Glenn, Carolin L. Schultz, Mark Farman, Claus Svendsen, David J. Spurgeon, and Olga V. Tsyusko*. In Review. Genomic mutations after multigenerational exposure of Caenorhabditis elegans to pristine and sulfidized silver nanoparticles. Environmental Pollution. 11/2019
CoMVoss, Stephen RPublication

Marks RA, Smith JJ, Cronk Q, Grassa CJ, McLetchie DN. Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance. Sci Rep. 2019 Jun 19;9(1):8722.

CoMVoss, Stephen RPublicationSmith JJ*, Timoshevskaya N, Timoshevskiy VA, Keinath MC, Hardy D, Voss SR (2019) A chromosome-scale assembly of the axolotl genome. Genome Research, 29: 317-324.
A&SWeisrock, DavidPublication

Hime PM, Briggler JT, Reece JS, Weisrock DW. Genomic data reveal conserved female heterogamety in giant salamanders with gigantic nuclear genomes. G3: Genes | Genomes | Genetics, 2019 Oct; 9(10): 3467–3476

A&SWeisrock, DavidPublicationHotaling S, Shain DH, Lang SA, Bagley RK, Tronstad LM, Weisrock DW, Kelley JL. Long-distance dispersal, ice sheet dynamics, and mountaintop isolation underlie the genetic structure of glacier ice worms. Proceedings of the Royal Society B, Published:19 June 2019
A&SWeisrock, DavidPublicationHotaling S, Foley ME, Zeglin L, Finn DS, Tronstad LM, Giersch JJ, Muhlfeld CC, Weisrock DW. Microbial assemblages reflect environmental heterogeneity in alpine streams. Global Change Biology, First published: 11 May 2019
A&SYang, Dong-ShengPublication

Wang, W. Sun, D. -S. Yang, and F. Yang, “Conversion of Soybean Waste to Sub-micron Porous-Hollow Carbon Spheres via a Reagent and Template-Free Route”, Mater. Today Energy 13, 50-55 (2019).

A&SYang, Dong-ShengPublicationW. Cao, Y. Zhang, and D. -S. Yang, “La-Mediated Dehydrogenation and C-C Bond Cleavage of 1,4-Pentadiene and 1-Pentyne: Spectroscopy and Formation of La(C5H6) and La(C3H4) Radicals”, J. Organomet. Chem. (Special Issue Dedicated to Richard J. Puddephatt’s 75th Birthday) 880, 187-195 (2019).
A&SYe, QiangConference ProceedingK.D. Maduranga, K. Helfrich and Qiang Ye, Complex Unitary Recurrent Neural Networks using Scaled Cayley Transform, Proceedings of the Thirty-Third AAAI (Association for the Advancement of Artificial Intelligence) Conference on Artificial Intelligence ( AAAI-19) 2019
CoPZhan, Chang-GuoPublicationZhou S, Yuan Y, Zheng F, Zhan CG “Structure-based virtual screening leading to discovery of highly selective butyrylcholinesterase inhibitors with solanaceous alkaloid scaffolds” Chem Biol Interact. 2019 Aug 1;308:372-376.




































2018 Publications

DepartmentAuthor/sTypeReference
ECEAdams, Robert JPublicationR. Pfeiffer, J.C. Young, and R.J. Adams, ""Divergence-Conforming Constrained Basis Functions for Hexahedral Volume Elements,"" IEEE Trans. Antennas Propagat., vol. 66, no. 1, pp. 501-504, Jan. 2018. doi: 10.1109/TAP.2017.2775288
ECEAdams, Robert JPublication

J.C. Young, R. Pfeiffer, R. J. Adams, and S. D. Gedney, ""Locally Corrected Nystrom Discretization for Impressed Current Cathodic Protection Systems,"" Applied Electromagnetics Society Journal, vol. 33, no. 10, pp. 1081-1085, October, 2018. 

ECEAdams, Robert J

Conference Proceeding

J.C. Young*, R. Pfeiffer, R. J. Adams, and S. D. Gedney, "Locally Corrected Nystrom Discretization for Impressed Current Cathodic Protection Systems," 2018 International Applied Computational Electromagnetics Society Symposium, Paper 31-01, Denver, CO, March 24 - March 29, 2018.
AGBall, Barry AConference Proceeding

Loux SC, Dini P, Wang, K, Baxter D, Ball BA. Characterization of pregnancy-associated miRNA clusters in the horse. Plant and Animal Genome Conference, San Diego, CA. P#0352, 2018.

AGBall, Barry AConference ProceedingDini P, Loux SC, Esteller-Vico A, Scoggin KE, Kalbfleisch TS, Daels P, Ball BA. Identification of imprinting in Rtl1/Rtl1_antisense using high-throughput analysis of RNA and DNA. Plant and Animal Genome Conference, San Diego, CA. P#0344, 2018.
AGBall, Barry AConference ProceedingLoux SC, Dini P, Kalbfleisch TS, Esteller-Vico A, Ball BA. Optimization of GFF Files for Transcriptome Analysis in the Horse. Plant and Animal Genome Conference, San Diego, CA. P#0131, 2018.
AGBall, Barry AConference ProceedingEsteller-Vico A, Dini P, Kalbfleisch TS, Ball BA. Sex determination of equine embryos using the ratio of heterozygous to homozygous variants and differential gene expression of chromosome X. Plant and Animal Genome Conference, San Diego, CA. P#0351, 2018.
AGBall, Barry AConference ProceedingLoux SC, Dini P, Kalbfleisch T, Esteller-Vico A, Ball BA. A closer look at the equine feto-maternal interface via high-throughput sequencing. J Eq Vet Sci 66:231, 2018.
AGBall, Barry AConference ProceedingBall BA, Loux SC, Kennedy L, Kalbfleisch TS, Scoggin KE, Esteller-Vico A, Horohov DW, Erol E, Carter CN, Smith JL. Transcriptomic analysis of the chorioallantois from mares with Nocardioform placentitis. J Eq Vet Sci 66:231, 2018.
AGBall, Barry AConference ProceedingDini P, Esteller-Vico A, Loux SC, Carossino M, Scoggin KE, Kalbfleisch TS, Daels P, Ball BA. Reciprocal paternal and maternal control of angiogenesis in equine chorioallantois J Eq Vet Sci 6:224, 2018.
AGBall, Barry AConference ProceedingEl-Sheikh Ali H, Ball BA. Characterization of myometrial gene expression associated with equine placentitis by RNA sequencing. Society of Postdoctoral Scholars (SOPS), June, 2018.
CoEBrehm, ChristophConference ProceedingC. Brehm, O.M.F. Browne, and N. Ashton “Towards a Viscous Wall Model for Immersed Boundary Meth- ods”, AIAA 2018-1560, incl. presentation at AIAA 11 SciTech, 8-12 January, Kissimmee, FL
CoEBrehm, ChristophConference Proceeding

Davis, and C. Brehm “Direct Numerical Simulations of Turbulence Suppression in Rotating Pipe Flows” Blue Waters Symposium, June 2-6, 2019 Sunriver, OR J. Davis, S. Ganju, S. Bailey, and C. Brehm “Direct Numerical Simulations of Rotating Turbulent Pipe Flows at Moderate Reynolds Numbers” APS DFD, 18-20 November, 2018

CoEBrehm, ChristophConference ProceedingC. Borchetta and C. Brehm, and S. Bailey On the Development of an Apparatus to Examine Rotating Pipe Flow at High Rotation Numbers APS DFD, 18-20 November, 2018
CoEBrehm, ChristophConference ProceedingO.M.F. Browne, S. Litterer and C. Brehm, “A Biglobal Stability Solver on Block-Structured Cartesian Domain-Decomposed Irregular Domains,” 30th International Conference on Parallel Computational Fluid Dynamics (ParCFD18)
CoEBrehm, ChristophConference ProceedingJ. Davis, S. Ganju, S. Bailey and C. Brehm, “Direct Numerical Simulations of Turbulence Suppression in Rotating Flows,” 30th International Conference on Parallel Computational Fluid Dynamics (ParCFD18)
CoEBrehm, ChristophConference Proceeding“Towards an Immersed Boundary Method with Viscous Wall Model”, Applied Modeling and Simulation Seminar Series, May 3, 2018, NASA Ames, Moffett Field, CA
CoEBrehm, ChristophConference Proceeding“A locally Stabilized Higher-Order Immersed Boundary Method and Relevant Most Recent Applications,” Invited talk at European Workshop on High Order Nonlinear Numerical Methods for Evolutionary PDEs: Theory and Applications" 2018
CoECramer, Aaron MPublication

M. Liu and A. M. Cramer, “Computing budget allocation in multi-objective evolutionary algorithms for stochastic problems,” Swarm and Evolutionary Computation, vol. 38, pp. 267–274, Feb. 2018.

A&SCrawford, Christopher BConference Proceeding

J.A.~Fry {\it et al.}, ``The Nab Experiment: A Precision Measurement of Unpolarized Neutron Beta Decay'', \href{https://arxiv.org/pdf/1811.10047.pdf}{arXiv:1811.10047}, PPNS 2018.

A&SCrawford, Christopher BConference Proceeding

``Prospects of a counting-mode NDTG experiment at NIST,'' KITP Workshop on Hadronic Parity Violation, Santa Barbara, CA, 2018-03-15.

A&SCrawford, Christopher BConference Proceeding``The NPDGamma Experiment a new era in Hadronic Parity Violation,'' 15th International Workshop on Meson Physics, Kraków, Poland, 2018-06-11.
A&SCrawford, Christopher BConference Proceeding``The n-3He Experiment: A new era in Hadronic Parity Violation,'' 7th International Symposium on Symmetries in Subatomic Physics, Aachen, Germany, 2018-06-13.
A&SCrawford, Christopher BConference Proceeding`NDTGamma: A pulse-counting Hadronic Parity Violation experiment'', Particle Physics with Neutrons at the ESS, NORDITA, Stockholm, Sweden, 2018-12-11.
A&SCrawford, Christopher BConference Proceeding``The Parity Violating Proton Asymmetry from Neutron Capture on Helium-3,'' Western Kentucky University Colloquium, Bowling Green, KY, 2018-02-26.
A&SCrawford, Christopher BConference Proceeding`Life at Low Coupling Constant,'' Colloquium, University of Kentucky Department of Physics and Astronomy, Lexington, KY, 2018-09-07.
A&SCrawford, Christopher BConference ProceedingC.B.~Crawford, ``NDTGamma: A pulse-counting Hadronic Parity Violation experiment'', 5th Joint Meeting of the Nuclear Physics Divisions of the American Physical Society and the Physical Society of Japan, Waikoloa, HI, 2018-10-26;
A&SDeLong, LancePublication

"Coupled macrospins: Mode dynamics in symmetric and asymmetric vertices"", Wonbae Bang, Matthias B. Jungfleisch, Federico Montoncello, Barry W. Farmer, Pavel N. Lapa, Axel Hoffmann, Loris Giovannini, Lance E. De Long and John B. Ketterson, AIP Advances 8, 056020 (2018); doi: 10.1063/1.5007281

A&SDelong, LancePublication“Mutual influence between macrospin reversal order and spin-wave dynamics in isolated artificial spin-ice vertices”, F. Montoncello, L. Giovannini, W. Bang, J. B. Ketterson, M. B. Jungfleish, A. Hoffmann, B. W. Farmer and L. E. De Long, Phys. Rev. B 97, 014421 (2018)."
A&SDymarsky, AnatolyPublication

Subsystem eigenstate thermalization hypothesis Anatoly Dymarsky, Nima Lashkari, and Hong Liu, Phys. Rev. E 97, 012140 – Published 25 January 2018 

A&SDymarsky, AnatolyPublicationBound on Eigenstate Thermalization from Transport, Anatoly Dymarsky Department of Physics and Astronomy, University of Kentucky, Lexington, KY 40506 and Skolkovo Institute of Science and Technology, Skolkovo Innovation Center, Moscow, Russia, 143026 (Dated: April 25, 2018) (Preprint 2018"
Public HealthEllingson, SallyPublication

Jones D, Bopaiah J, Alghamedy F, Jacobs N, Weiss H, de Jong W, Ellingson SR. Polypharmacology Within the Full Kinome: a Machine Learning Approach. AMIA Informatics 2018. (Accepted).

Public HealthEllingson, SallyPublicationAlghamedy F, Bopaiah J, Jones D, Zhang X, Weiss H, Ellingson SR. Incorporating Protein Dynamics Through Ensemble Docking in Machine Learning Models to Predict Drug Binding. AMIA Informatics 2018. (Accepted)
A&SFerland, GaryPublication

T. P. Adhikari, K. Hryniewicz, A. Różańska, B. Czerny, and G. J. Ferland. 2018. Intermediate-line Emission in AGNs: The Effect of Prescription of the Gas Density. Monthly Notices of the Royal Astronomical Society 856, 1, Article 78 (Mar 2018), 78 pages. https://doi.org/10.3847/1538-4357/aab350 arXiv:astro-ph.GA/1803.00090

A&SFerland, GaryPublicationRory Bentley, Al Wootten, Ed Loh, Jack Baldwin, Gary Ferland, Andy Fabian, Francoise Combes, Philippe Salome, and Arancha Castro-Carrizo.  2018. ALMA Submillimeter Observations of Molecular Globules within the Crab Nebula. In American Astronomical Society Meeting Abstracts #231 (American Astronomical Society Meeting Abstracts), Vol. 231. Article 241.01, 241.01 pages.
A&SFerland, GaryPublicationE. Bon, P. Marziani, M. Berton, N. Bon, R. Antonucci, M. Gaskell, and G. Ferland. 2018. Fe II velocity shifts in optical spectra of type 1 AGN. In Revisiting Narrow-Line Seyfert 1 Galaxies and their Place in the Universe. Article 7, 7 pages. arXiv:astro-ph.GA/1812.05828
A&SFerland, GaryPublicationFrances Cashman, Varsha Kulkarni, Romas Kisielius, Gary Ferland, and Pavel Bogdanovich. 2018. Atomic Data Revisions for Improving Absorption Line Studies of the Interstellar, Circumgalactic, and Intergalactic Medium. In American Astronomical Society Meeting Abstracts #231 (American Astronomical Society Meeting Abstracts), Vol. 231. Article 203.01, 203.01 pages.
A&SFerland, GaryPublicationMarios Chatzikos, Gary Ferland, Francisco Guzman, Peter van Hoof, and Robins Williams. 2018. Advances in the C17 Release of the Spectral Code CLOUDY. In Walking the Line 2018. Article 13, 13 pages. https://doi.org/10.5281/zenodo.1209973
A&SFerland, GaryPublicationJeremy M. Huber, John F. Kielkopf, Matthew Mengel, Bradley D. Carter, Gary J. Ferland, and Frank O. Clark. 2018. A young solar twin in the Rosette cluster NGC 2244 line of sight. Monthly Notices of the Royal Astronomical Society 476, 1 (May 2018), 323–335. https://doi.org/10.1093/mnras/sty188
A&SFerland, GaryPublicationD. Nikolić, T. W. Gorczyca, K. T. Korista, M. Chatzikos, G. J. Ferland, F. Guzmán, P. A. M. van Hoof, R. J. R. Williams, and N. R. Badnell. 2018.  Suppression of Dielectronic Recombination Due to Finite Density Effects. II. Analytical Refinement and Application to Density-dependent Ionization Balances and AGN Broad-line Emission. Monthly Notices of the Royal Astronomical Societys 237, 2, Article 41 (Aug 2018), 41 pages. https://doi.org/10.3847/1538-4365/aad3c5 arXiv:physics.atom-ph/1808.073654 Gary J. Ferland Publications
A&SFerland, GaryPublicationS. White, R. Irwin, J. R. Warwick, G. F. Gribakin, G. Sarri, F. P. Keenan, D. Riley, S. J. Rose, E. G. Hill, G. J. Ferland, B. Han, F. Wang, and G. Zhao.  2018. Production of photoionized plasmas in the laboratory with x-ray line radiation. Monthly Notices of the Royal Astronomical Society 97, 6, Article 063203 (Jun 2018), 063203 pages. https://doi.org/10.1103/PhysRevE.97.063203 arXiv:astro-ph.HE/1805.05767
CoEFox, JamesConference ProceedingMahoney, Tyler, Nabil Al-Aamery, Jimmy Fox, and Admin Husic. 2018. Watershed sediment transport modeling using dynamic lateral, longitudinal, and vertical sediment (dis)connectivity, Kentucky Water Resources Annual Symposium, Lexington, KY, March 19, 2018.
CoEGoldsmith, JudithPublicationKshitija Taywade, Judy Goldsmith, and Brent Harrison. "Decentralized Multiagent Approach for Hedonic Games." In European Conference on Multi-Agent Systems, pp. 220-232. Springer, Cham, 2018.
CoEGriffioen, JamesConference ProceedingSergio Rivera, James Griffioen, Zongming Fei, Mami Hayashida, Pinyi Shi, Bhushan Chitre, Jacob Chappell, Yongwook Song, Lowell Pike, Charles Carpenter, and Hussamuddin Nasir, ""Navigating the Unexpected Realities of Big Data Transfers in a Cloud-based World"", Practice and Experience in Advanced Research Computing Conference 2018 (PEARC'18), July 2018
CoEGutierrez Soto, Mariantonieta Conference ProceedingM. Gutierrez Soto (2018) ”Bio-inspired hybrid vibration control methodology for intelligent isolated bridge structures"" Proc. SPIE 10595, Active and Passive Smart Structures and Integrated Systems XII, 1059511. (7 March 7 2018). Denver, CO. DOI: 10.1117/12.2300393"
CoEHoagg, Jesse BPublication

A. S. Mousavi, E. Hellstrom, M. Jankovic, M.A. Santillo, T. M. Seigler, and J. B. Hoagg. “Effects of time delay as humans learn to control dynamic systems,” Proc. IEEE Int. Conf. Syst., Man, Cyb., pp. 3446–3451, Miyazaki, Japan, October 2018. DOI: 10.1109/SMC.2018.00584

CoEHoagg, Jesse BPublicationS. Koushkbaghi, S. Wang, T. M. Seigler, and J. B. Hoagg. “Modeling the control strategies that humans use to control dynamic systems with nonlinearity,” Proc. IEEE Int. Conf. Syst., Man, Cyb., pp. 3732–3737, Miyazaki, Japan, October 2018. DOI: 10.1109/SMC.2018.00632
CoEHoagg, Jesse BPublicationX. Zhang, S. Wang, J. B. Hoagg, and T. M. Seigler, “The roles of feedback and feedforward as humans learn to control unknown dynamic systems,” IEEE Transactions on Cybernetics, vol. 48, no. 2, pp. 543–555, 2018. DOI: 10.1109/TCYB.2016.2646483
CoEIonel, DanPublication

Gong, H., Akeyo, O. M., Rallabandi, V., and Ionel, D. M., ""Real Time Operation of Smart Homes with PV and Battery Systems under Variable Electricity Rate Schedules and Transactive Power Flow"", Proceedings, IEEE ICRERA 2018, Paris, France, doi: 10.1109/ICRERA.2018.8566895, pp. 1392-1395 (Oct 2018)

CoEIonel, DanPublicationGong, H., Rallabandi, V., Ionel, D. M., Colliver, D., Duerr, S., and Ababei, C., ""Net Zero Energy Houses with Dispatchable Solar PV Power Supported by Electric Water Heater and Battery Energy Storage"", Proceedings, IEEE ECCE 2018, Portland, OR, doi: 10.1109/ECCE.2018.8557720, pp. 2498-2503 (Sep 2018)
CoEIonel, DanPublicationRallabandi, V., Wu, J., Cramer, A. M., Ionel, D. M., and Zhou, P., “Optimal Design of Outer Rotor Switched Reluctance Machines for Direct Drive Rim Applications”, Proceedings, IEEE ECCE 2018, Portland, OR, 6p (Sep 2018)
CoEIonel, DanPublicationTaran, N., Rallabandi, V., Heins, G., and Ionel, D. M., “Exploring the Efficiency and Cost Limits of Fractional hp Axial Flux PM Machine Designs”, Proceedings, IEEE ECCE 2018, Portland, OR, 6p (Sep 2018)
CoEIonel, DanPublicationTaran, N., Heins, G., Rallabandi, V., Patterson, D., and Ionel, D. M., “Torque Production Capability of Axial Flux Machines with Single and Double Rotor Configuration,” Proceedings, IEEE ECCE 2018, Portland, OR, 6p (Sep 2018)
CoEIonel, DanPublicationRallabandi, V., Lawhorn, D., Ionel, D. M., and Li, X., “Multi-Physics Modeling for Electric and Hybrid Vehicles with In-wheel Electric Motors”, Proceedings, IEEE ITEC 2018, Long Beach, CA, doi: 10.1109/ITEC.2018.8450091, 6p (Jun 2018)
CoEIonel, DanPublicationTaran, N., Ionel, D. M., and Dorrell, D. G., “Two-Level Surrogate–Assisted Differential Evolution Multi–Objective Optimization of Electric Machines Using 3D FEA”, IEEE Transactions on Magnetics, Vol. 54, No. 11, pp. 1-5, doi: 10.1109/TMAG.2018.2856858, 5p (2018)
CoEIonel, DanPublicationRallabandi, V., Wu, J., Zhou, P., Dorrell, D. G., and Ionel, D. M., “Optimal Design of a Switched Reluctance Motor With Magnetically Disconnected Rotor Modules Using a Design of Experiments Differential Evolution FEA-Based Method,” IEEE Transactions on Magnetics, Vol. 54, No. 11, pp. 1-5, doi: 10.1109/TMAG.2018.2850744 (2018)
CoEIonel, DanPublicationTaran, N., Ionel, D. M., and Dorrell, D. G., “Two-Level Surrogate-Assisted Differential Evolution Multi-Objective Optimization of Electric Machines Using 3D FEA”, Proceedings, IEEE INTERMAG 2018, Singapore, doi: 10.1109/INTMAG.2018.8508483, 2d (Apr 2018)
CoEIonel, DanConference Proceeding

“Novel Axial Flux Ultra-high Polarity and High-frequency Electric Machines for Wide Band Gap Power Electronic Drive”; Sponsor: National Science Foundation (NSF); Oct 2018 – Sep 2021; PI: Dan M. Ionel; Co-PI: Aaron Cramer

CoEIonel, DanConference Proceeding“Solar Power Electronics Modular Integrated Node (SPIN) Platform”; Sponsor: Department of Energy (DOE as main; sub award from Flex Power Controls, LLC); Oct 2018 - Aug 2021; PI: Dan M. Ionel; Co-PI: Yuan Liao
CoEJacobs, NathanPublicationWeilian Song, Scott Workman, Armin Hadzic, Reginald Souleyrette, Eric Green, Mei Chen, Xu Zhang, and Nathan Jacobs. FARSA: Fully Automated Roadway Safety Assessment. In IEEE Winter Conference on Applications of Computer Vision (WACV), 2018.
CoEJohnson, Michael TConference Proceeding

Narjes Bozorg and Michael T. Johnson, Comparing Performance of Acoustic-to-Articulatory Inversion for Mandarin Accented English and American English Speakers, International Symposium on Signal Processing and Information Technology, Louisville, KY, December 2018.

CoEJohnson, Michael TConference ProceedingSidrah Liaqat, Narjes Bozorg, Neenu Jose, Patrick Conrey, Antony Tamasi and Michael T. Johnson, Domain Tuning Methods for Bird Audio Detection, Detection and Classification of Acoustic Scenes and Events 2018, Surrey, UK, November 2018.
AGKalbfleisch, TedPublicationKalbfleisch TS, Rice RS, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O'Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN. EquCab3: Improved reference genome for the domestic horse increases assembly contiguity and composition. Nature – Communications Biology, 16;1:197. doi: 10.1038/s42003-018-0199-z. 2018
A&SKaul, RibhuPublicationQuadrupolar quantum criticality on a fractal"", Jonathan D'Emidio, Simon Lovell, Ribhu K. Kaul. Phys. Rev. B 97, 184430 (2018), http://arxiv.org/abs/1708.07924, https://journals.aps.org/prb/abstract/10.1103/PhysRevB.97.184430
A&SKaul, RibhuPublicationEmergent symmetry at a transition between intertwined orders in a S = 1 magnet', Julia Wildeboer, Jonathan D'Emidio, Ribhu K. Kaul. https://arxiv.org/abs/1808.04731 (2018)
Public HealthKavuluru, Ramakanth V Publication

Noh and R. Kavuluru, Document Retrieval for Biomedical Question Answering with NeuralSentence Matching, Proceedings of the 17th IEEE International Conference on Machine Learning and Applications (ICMLA 2018), pp. 194-201

Public HealthKavuluru, Ramakanth V PublicationA.Rios, T. Tran, R. Kavuluru, Predicting Psychological Health from Childhood Essays with Convolutional Neural Networks for the CLPsych 2018 Shared Task (Team UKNLP), Proceedings of the Fifth Workshop on Computational Linguistics and Clinical Psychology (CLPsych 2018), pp. 107-112
A&SKekenes-Huskey, Pete Publication

Simulation of P2X-mediated calcium signalling in microglia. Chun BJ, Stewart BD, Vaughan DD, Bachstetter AD, Kekenes-Huskey PM. J Physiol. 2019 Feb;597(3):799-818. doi: 10.1113/JP277377. Epub 2018 Dec 17.

A&SKekenes-Huskey, Pete Publication3D dSTORM imaging reveals novel detail of ryanodine receptor localization in rat cardiac myocytes. Shen X, van den Brink J, Hou Y, Colli D, Le C, Kolstad TR, MacQuaide N, Carlson CR, Kekenes-Huskey PM, Edwards AG, Soeller C, Louch WE. J Physiol. 2019 Jan;597(2):399-418. doi: 10.1113/JP277360. Epub 2018 Nov 28.
A&SKekenes-Huskey, Pete PublicationElectrostatic control of calcineurin's intrinsically-disordered regulatory domain binding to calmodulin. Sun B, Cook EC, Creamer TP, Kekenes-Huskey PM. Biochim Biophys Acta Gen Subj. 2018 Dec;1862(12):2651-2659. doi: 10.1016/j.bbagen.2018.07.027. Epub 2018 Jul 31.
BELamarche, Carlos E PublicationHartley, R. and C. Lamarche, 2018. Behavioral Responses and Welfare Reform: Evidence from a Randomized Experiment. Labour Economics54, pp. 135-151
A&SLinnen, CatherinePublicationPfeifer, S.P.†, S. Laurent†, V. Sousa†, C.R. Linnen†, M. Foll, L. Excoffier, H.E. Hoekstra, and J.D. Jensen. 2018. The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. Molecular Biology and Evolution 35: 792-806. - †Co-first authors
A&SLinnen, CatherinePublication

C.R. Linnen, O’Quin, C.T.***, T. Shackleford**, C. Sears**, and C. Lindstedt. 2018. Genetic basis of body color and spotting pattern in the redheaded pine sawfly (Neodiprion lecontei). Genetics 209: 291-305.

A&SLinnen, CatherinePublicationVertacnik, K.L.*, D. Herrig***, R. Unckless, D. Wagner, S. Geib, H. Robertson, and C.R. Linnen. Genomic signatures of ecological specialization in the redheaded pine sawfly (Neodiprion lecontei). (pending) 2018
A&SLinnen, CatherineConference Proceeding

2018 Population, Evolutionary, and Quantitative Genetics Conference (Madison, WI) “The predictability of genomic signatures of specialization in a generalist/specialist species pair” (*K. Vertacnik and C. Linnen) [poster]

A&SLinnen, CatherineConference Proceeding2018 Population, Evolutionary, and Quantitative Genetics Conference (Madison, WI) “Simulations and genomic data from hybridizing haplodiploids reveal exceptionally heterogeneous genetic differentiation” (*E. Bendall, V. Sousa, and C. Linnen) [poster].
CoPLodder, RobertPublication

Braden Adams and Robert A. Lodder, Setting Starting Level for a Trial of a Biofilm-Disrupting Adjuvant. Webmedcentral INFECTIOUS DISEASES, 2018. WMC005521. BIORXIV/2018/447607. 2018. https://www.biorxiv.org/content/early/2018/10/19/447607.1 https://doi.org/10.1101/447607

CoPLodder, RobertPublicationClaire Kruger and Robert Lodder, Establishing limits for THC content in hemp derived foods, Food Technology, Volume 72, No.9, Sep. 2018, 20-21.
CoPLodder, RobertPublicationCynthia Dickerson and Robert A. Lodder. The QNOAEL vs. BMD for Point of Departure. BIORXIV/2018/329763, doi: https://doi.org/10.1101/329763, http://biorxiv.org/cgi/content/short/329763v1
CoPLodder, RobertPublicationCynthia Dickerson and Robert A. Lodder. A Novel Statistical Approach to NOAEL: QBEST Applied to Dosing of Ellagic Acid. WebmedCentral TOXICOLOGY 2018,WMC005451
CoPLodder, RobertPublicationCynthia Dickerson, Mark Ensor, and Robert A. Lodder. Establishing EDI for a Clinical Trial of a Treatment for Chikungunya. Springer Lecture Notes in Computer Science, 2018.
AGMacLeod, JamesPublication

Liu X, MacLeod JN, Liu J. iMapSplice: alleviating reference bias through personalized RNA-seq alignment. PLoS One, 13(8):e0201554. doi: 10.1371/journal.pone.0201554, 2018.

AGMacLeod, JamesPublicationZhang Y, Liu X, MacLeod JN, Liu J. Discerning novel splice junctions from RNA-seq alignment: a machine learning approach. BMC Genomics, 19:971, doi: 10.1186/s12864-018-5350-1. 2018.
AGMacLeod, JamesPublicationKalbfleisch TS, Rice RS, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O'Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN. EquCab3: Improved reference genome for the domestic horse increases assembly contiguity and composition. Nature – Communications Biology, 16;1:197. doi: 10.1038/s42003-018-0199-z. 2018.
CoEMartin, AlexandrePublication

Fu, R., Weng, H., Wenk, J. F., and Martin, A., “Thermal expansion for charring ablative materials,” Journal of Thermophysics and Heat Transfer, 2018, Submitted (Control ID 2019-01-T5718). Accepted

CoEMartin, AlexandrePublicationFu, R., Weng, H., Wenk, J. F., and Martin, A., “Thermo-mechanical coupling for charring ablators,” Journal of Thermophysics and Heat Transfer, vol. 32, no. 2, pp. 369– 379, 2018. doi: 10.2514/1.T5194.
CoEMartin, AlexandrePublicationLi, Z., Bailey, S. C. C., Hoagg, J. B., and Martin, A., “A retrospective cost adaptive Reynolds-averaged Navier-Stokes k-w model for data-driven unsteady turbulent simulation,” Journal of Computational Physics, vol. 357C, pp. 353–374, 2018. doi: 10.1016/j.jcp.2017.11.037.
CoEMartin, AlexandreConference Proceeding

Cooper, J. M., Schroeder, O. M., Weng, H., and Martin, A., “Implementation and verification of a surface recession module in a finite volume ablation solver,” in 12th AIAA/ASME Joint Thermophysics and Heat Transfer Conference, AIAA Paper 2018- 3272, Atlanta, GA, 2018. doi: 10.2514/6.2018-3272.

CoEMartin, AlexandreConference ProceedingDuzel, U., Schroeder, O. M., and Martin, A., “Computational prediction of NASA Langley HYMETS arc jet flow with KATS,” in 56th AIAA Aerospace Sciences Meeting, AIAA 2018- 1719, Kissimmee, FL, 2018. doi: 10.2514/6.2018-1719.
CoEMcDonough, JamesConference Proceeding30th International Conference on Parallel Computational Fluid Dynamics Parallel CFD2018, Keynote Address, “OPENMP PARALLELIZATION OF BURGERS’ EQUATION MODEL OF TURBULENT DUCT FLOW”, J. M. MCDONOUGH.
A&SMcLetchie, D. NicholasPublicationMarks, R. A., Smith, J. J., Cronk, Q., & McLetchie D. N. 2018. Variation in the bacteriome of the tropical liverwort, Marchantia inflexa, between the sexes and across habitats. Symbiosis, 75 93-101. https://doi.org/10.1007/s13199-017-0522-3 (Online Nov3 2017)"
AGPalli, Subba RPublication

Roy A, Palli SR. Epigenetic modifications acetylation and deacetylation play important roles in juvenile hormone action. BMC Genomics. 2018 Dec 14;19(1):934. doi: 10.1186/s12864-018-5323-4. PubMed PMID: 30547764; PubMed Central PMCID: PMC6295036.

AGPalli, Subba RPublicationYoon JS, Mogilicherla K, Gurusamy D, Chen X, Chereddy SCRR, Palli SR. Double-stranded RNA binding protein, Staufen, is required for the initiation of RNAi in coleopteran insects. Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):8334-8339. doi: 10.1073/pnas.1809381115. Epub 2018 Jul 30. PubMed PMID: 30061410; PubMed Central PMCID: PMC6099913.
AGPalli, Subba RPublicationGaddelapati SC, Kalsi M, Roy A, Palli SR. Cap 'n' collar C regulates genes responsible for imidacloprid resistance in the Colorado potato beetle, Leptinotarsa decemlineata. Insect Biochem Mol Biol. 2018 Aug;99:54-62. doi: 10.1016/j.ibmb.2018.05.006. Epub 2018 May 28. PubMed PMID: 29852222.
AGPalli, Subba RPublicationMogilicherla K, Howell JL, Palli SR. Improving RNAi in the Brown Marmorated Stink Bug: Identification of target genes and reference genes for RT-qPCR. Sci Rep. 2018 Feb 27;8(1):3720. doi: 10.1038/s41598-018-22035-z. PubMed PMID: 29487333; PubMed Central PMCID: PMC5829169.
CoEPayne, Christina MPublications

A. Kognole and C. M. Payne*, “Cellulose-specific Type B carbohydrate binding modules: understanding oligomeric and non-crystalline recognition mechanisms,” Biotech. Biofuels, 11:319 (2018).

CoEPayne, Christina MPublicationsI. Geronimo, C. A. Denning, D. K. Heidary, E. C. Glazer*, and C. M. Payne*, “Molecular determinants of substrate affinity and enzyme activity of a cytochrome P450BM3 variant,” Biophys. J., 115(7), 1251-1263 (2018).
CoEPayne, Christina MPublicationsB. Liu, A. A. Kognole, M. Wu, B. Westereng, M. F. Crowley, S. Kim, M. Dimarogona*, C. M. Payne*, M. Sandgren*, “Structural and molecular dynamics studies of a C1-oxidizing lytic polysaccharide monooxygenase from Heterobasidion irregulare reveal amino acids important for substrate recognition,” FEBS J., 285, 2225-2242 (2018).
CoEPayne, Christina MPublicationsA. S. Borisova, E. V. Eneyskaya, S. Jana, S. F. Badino, J. Kari, A. Amore, M. Karlsson, H. Hansson, M. Sandgren, M. E. Himmel, P. Westh, C. M. Payne*, A. A. Kulminskaya*, and J. Stahlberg*, “Correlation of structure, function and protein dynamics in GH7 cellobiohydrolases from Trichoderma atroviride, T. reesei and T. harzianum,” Biotech. Biofuels, 11:5 (2018).
AGRavat, DhananjayConference ProceedingRavat, D., M. Purucker, N. Olsen, 2018,  Global High Resolution Crustal Magnetic Field at the Surface of the Moon from Low-altitude Lunar Prospector Magnetic Gradient Data,  2018 Fall Meeting, AGU, Washington DC, 10-15 Dec.
CoERenfro, Michael WConference Proceeding

Owens, T. C., Grib, S. W., and Renfro, M. W. (2018). Temperature effect on autoignition for a premixed jet in vitiated coflow. Proceedings of the Central States Section Meeting, The Combustion Institute, Minneapolis, MN.

CoERenfro, Michael WConference ProceedingGrib, S. W., Owens, T. C., and Renfro, M. W. (2018). Stabilization of a premixed jet in vitiated coflow. Proceedings of the Central States Section Meeting, The Combustion Institute, Minneapolis, MN.
CoERenfro, Michael WConference ProceedingGrib, S. W. and Renfro, M. W. (2018). Unsteady negative edge flames in a periodic flow. Proceedings of the Central States Section Meeting, The Combustion Institute, Minneapolis, MN.
CoERenfro, Michael WConference ProceedingGrib, S. W. and Renfro, M. W. (2018). Autoignition stabilization of a premixed jet in vitiated coflow. AIAA SciTech Forum and Exposition, Kissimmee, FL."
A&SRisko, ChadPublication

Magnetic Ordering in a Vanadium-Organic Coordination Polymer using a Pyrrolo[2,3-d:5,4-d′]bis(thiazole)-based Ligand. Y.A. Getmanenko, C.S. Mullins, V.N. Nesterov, S. Lake, C. Risko & E. Johnston-Halperin. RSC Advances (2018) 8, 36223-36232. DOI: 10.1039/C8RA05697H

A&SRisko, ChadPublicationExploring Thermal Transitions in Anthradithiophene-based Organic Semiconductors to Reveal Structure-Packing Relationships. S. Li, S.M. Ryno & C. Risko. Journal of Materials Chemistry C (2018) 6, 10924-10934. DOI: 10.1039/C8TC03976C
A&SRisko, ChadPublicationDonor or Acceptor? How Selection of the Rylene Imide End Cap Impacts the Polarity of π-Conjugated Molecules for Organic Electronics. A.J. Payne, N.A. Rice, S.M. McAfee, S. Li, P. Josse, C. Cabanetos, C. Risko, B.H. Lessard & G.C. Welch. ACS Applied Energy Materials (2018) 1, 4906-4916. DOI: 10.1021/acsaem.8b00929
A&SRisko, ChadPublicationPresence of Short Intermolecular Contacts Screens for Kinetic Stability in Packing Polymorphs. G.E. Purdum, N.G. Telesz, K. Jarolimek, S.M. Ryno, T. Gessner, N.C. Davy, A.J. Petty, II, Y. Zhen, Y. Shu, A. Facchetti , G.E. Collis, W. Hu, C. Wu, J.E. Anthony, R.T. Weitz, C. Risko & Y.L. Loo. Journal of the American Chemical Society (2018) 140, 7519-7525. DOI: 10.1021/jacs.8b01421
A&SRisko, ChadPublicationPositional Effects from σ-Bonded Platinum (II) on Intersystem Crossing Rates in Perylenediimide Complexes: Synthesis, Structures, and Photophysical Properties. J. Yarnell, I. Davydenko, P. Dorovatovskii, V. Khrustalev, T.V. Timofeeva, F. Castellano, S.R. Marder, C. Risko & S. Barlow. Journal of Physical Chemistry C (2018) 122, 13848-13862. DOI: 10.1021/acs.jpcc.8b01003
A&SRisko, ChadPublicationEffect of Halogenation on the Energetics of Pure and Mixed Phases in Model Organic Semiconductors Comprised of Anthradithiophene Derivatives and C60. A. Abtahi, S.M. Mazza, S.M. Ryno, E.K. Loya, R. Li, S.R. Parkin, C. Risko, J.E. Anthony & K.R. Graham. Journal of Physical Chemistry C (2018) 122, 4757-4767. DOI: 10.1021/acs.jpcc.7b11729
A&SRisko, ChadPublicationDelimited Polyacenes: Edge Topology as a Tool to Modulate Carbon Nanoribbon Structure, Conjugation, and Mobility. Q. Ai, K. Jarolimek, S. Mazza, J.E. Anthony & C. Risko. Chemistry of Materials (2018) 30, 947-957. DOI: 10.1021/acs.chemmater.7b04715
A&SRisko, ChadPublication

Bromination of the Benzothioxanthene Bloc: Toward New π-Conjugated Systems for Organic Electronic Applications. P. Josse, S. Li, S.V. Dayneko, D. Joly, A. Labrunie, S. Dabos-Seignon, M. Allain, B. Siegler, R. Demadrille, G.C. Welch, C. Risko, P. Blanchard & C. Cabanetos. Journal of Materials Chemistry C (2018) 6, 761-766. DOI: 10.1039/C7TC05245F

A&SRisko, ChadPublicationOn the Molecular Origin of Charge Separation at the Donor-Acceptor Interface. G. Sini, M. Schubert, C. Risko, S. Roland, O.P. Lee, Z. Chen, T.V. Richter, D. Dolfen, V. Coropceanu, S. Ludwigs, U. Scherf, A. Facchetti, J.M. Fréchet & D. Neher. Advanced Energy Materials (2018) 1702232 (2018). DOI: 10.1002/aenm.201702232
A&SRisko, ChadPublicationImpact of Rotamer Diversity on the Self-Assembly of Nearly Isostructural Molecular Semiconductors. C. McDowell, K. Narayanaswamy, B. Yadagiri, T. Gayathri, M. Seifrid, R. Datt, S.M. Ryno, M.C. Heifner, V. Gupta, C. Risko, S. Singh & G. Bazan. Journal of Materials Chemistry A (2018) 6, 383-394. DOI: 10.1039/C7TA09972J
A&SShlosman, IsaacPublication

Ardaneh, K., Luo, Y., Shlosman, I., Nagamine, K., Wise, J., Begelman, M.C., ``Direct Collapse to Supermassive Black Hole Seeds with Radiative Transfer: Cosmological Halos,'' MNRAS, 479, 2277 (2018).  4.   Angela Collier, Isaac Shlosman and Clayton Heller What Makes the Family of Barred Disc Galaxies So Rich: Damping Stellar Bars in Spinning Haloes, MNRAS, 476, 1331 (2018). 

A&SShlosman, IsaacPublicationLuo, Y., Ardaneh, K., Shlosman, I., Nagamine, K., Wise, J., Begelman, M.C., ``Direct Collapse to Supermassive Black Hole Seeds with Radiative Transfer: Isolated Halos,'' MNRAS, 476, 3523 (2018).
A&SSmith, Jeramiah JPublication

Keinath MC, Timoshevskaya N, Timoshevskiy VA, Voss SR, Smith JJ* (2018) Miniscule differences between sex chromosomes in the giant genome of a salamander. Scientific Reports, 8:17882.

A&SSmith, Jeramiah JPublicationArenas Gómez CM, Ryan M. Woodcock RM, Jeramiah J. Smith JJ, Voss SR, Paul Delgado JP (2018) Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research. BMC Genomics, 19:704.
A&SSmith, Jeramiah JPublicationDwaraka V, Woodcock MR, Smith JJ, Voss SR (2018) Comparative Transcriptomics of Limb Regeneration: Identification of Conserved Expression Changes Amoung Three Species of Ambystoma. Genomics, 18: 30362-30368.
A&SSmith, Jeramiah JPublicationSmith JJ*, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, Robb SMC, Baker C, Eichler EE, Hockman D, Sauka-Spengler T, Yandell M, Krumlauf R, Elgar G, Amemiya CT (2018) The Sea Lamprey Germline Genome Provides Insights Into Programmed Genome Rearrangement and Vertebrate Evolution. Nature Genetics, 50:270-277.
A&SSmith, Jeramiah JPublicationHerman PE, Papatheodorou A, Bryant SA, Waterbury CKM, Herdy JR, Arcese AA, Buxbaum JD, Smith JJ, Morgan JR, Bloom O (2018) Highly conserved molecular pathways, including Wnt signaling, promote functional recovery from spinal cord injury in lampreys. Scientific Reports, 8:742.
AGTsyusko, OlgaConference ProceedingTsyusko Olga, Anye Wamucho, and Jason Unrine. Genetic and epigenetic mutations in Caenorhabditis elegans after multigenerational exposure to pristine and sulfidized silver nanoparticles.  13th International conference on the environmental effects of nanoparticles and nanomaterials (ICEENN 2018). Duke University, Durham NC. September 2018.
AGTsyusko, OlgaConference ProceedingWamucho Anye¸ O. Tsyusko, J. Unrine. Genetic and epi-mutations in Caenorhabditis elegans after multiple generations of exposure to pristine and sulfidized silver nanoparticles. Poster presented at: ""Nanoscale Science and Engineering for Agriculture and Food Systems"" Gordon Research Conference, June 3-8, 2018, Mount Holyoke College, South Hadley, MA.
CoMVoss, Stephen RPublication

Keinath MC, Timoshevskaya N, Timoshevskiy VA, Voss SR, Smith JJ* (2018) Miniscule differences between sex chromosomes in the giant genome of a salamander. Scientific Reports, 8:17882.

CoMVoss, Stephen RPublicationArenas Gómez CM, Ryan M. Woodcock RM, Jeramiah J. Smith JJ, Voss SR, Paul Delgado JP (2018) Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research. BMC Genomics, 19:704.
CoMVoss, Stephen RPublicationDwaraka V, Woodcock MR, Smith JJ, Voss SR (2018) Comparative Transcriptomics of Limb Regeneration: Identification of Conserved Expression Changes Amoung Three Species of Ambystoma. Genomics, 18: 30362-30368.
CoMVoss, Stephen RPublicationSmith JJ*, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, Robb SMC, Baker C, Eichler EE, Hockman D, Sauka-Spengler T, Yandell M, Krumlauf R, Elgar G, Amemiya CT (2018) The Sea Lamprey Germline Genome Provides Insights Into Programmed Genome Rearrangement and Vertebrate Evolution. Nature Genetics, 50:270-277.
CoMVoss, Stephen RPublicationHerman PE, Papatheodorou A, Bryant SA, Waterbury CKM, Herdy JR, Arcese AA, Buxbaum JD, Smith JJ, Morgan JR, Bloom O (2018) Highly conserved molecular pathways, including Wnt signaling, promote functional recovery from spinal cord injury in lampreys. Scientific Reports, 8:742.
Public HealthWang, ChiPublicationLiu H, Murali T, Yu T, Liu C, Sivakumaran TA, Moseley HNB, Zhulin IB, Weiss HL, Durbin EB, Ellingson SR, Liu J, Huang B, Hallahan BJ, Horbinski CM, Hodges K, Napier DL, Bocklage T, Mueller J, Vanderford NL, Fardo DW, Wang C* and Arnold SM*. Characterization of Squamous Cell Lung Cancers from Appalachian Kentucky. Cancer Epidemiology, Biomarkers & Prevention, cebp.0984.2017, 2018. *Co-corresponding authors.
A&SWeisrock, DavidPublication

Hotaling S, Kelley JL, Weisrock DW. Nuclear and mitochondrial genomic resources for the meltwater stonefly, Lednia tumana Ricker, 1952 (Plecoptera: Nemouridae). Aquatic Insects, 2018

A&SWeisrock, DavidPublicationMurphy SM, Hast JT, Augustine BC, Weisrock DW, Clark JD, Kocka DM, Ryan CW, Sajecki JL, Cox JJ. Early genetic outcomes of American black bear reintroductions in the Central Appalachians, USA. Ursus, 29:119-133.
A&SWeisrock, DavidPublicationYuan Z, Zhang B, Raxworthy CJ, Weisrock DW, Hime PM, Jin J, Lemmon AR, Lemmon EM, Holland SD, Kortyna M, Zhou W, Peng M, Che J, Prendini E. Natatanuran frogs used the Indian Plate to step-stone disperse and radiate across the Indian Ocean. National Science Review, 6:10-14.
A&SWeisrock, DavidPublicationHotaling S, Giersch JJ, Finn DS, Tronstad LM, Jordan SP, Serpa LE, Call RG, Muhlfeld CC, Weisrock DW. Congruent population genetic patterns but differing depths of divergence for three alpine stoneflies with similar ecology, geographic distributions, and climate change threats. Freshwater Biology, 64:335-347.
A&SWeisrock, DavidPublicationJones K, Weisrock DW. 2018. Genomic data reject the hypothesis of sympatric ecological speciation in a clade of Desmognathus salamanders. Evolution, 72:2378-2393.
A&SWeisrock, DavidPublicationWeisrock DW, Hime PM, Nunziata SO, Jones K, Murphy MO, Hotaling S, Kratovil JD. 2018. Surmounting the large-genome ""problem"" for genomic data generation in salamanders. In: Population Genomics: Wildlife. Editors Hohenlohe P, Rajora O. Springer, New York.
A&SWeisrock, DavidPublicationMurphy MO, Jones K, Price SJ, Weisrock DW. 2018. A genomic assessment of population structure in an aquatic salamander identifies the roles of spatial scale, barriers, and river architecture. Freshwater Biology, 63:407-419.
A&SWeisrock, DavidPublicationNunziata SO, Weisrock DW. 2018. Estimation of contemporary effective population size and population declines using RAD sequence data. Heredity, 120:196-207.
A&SWeisrock, DavidPublicationHotaling S, Muhlfeld CC, Giersch JJ, Ali OA, Jordan S, Miller MR, Luikart G, Weisrock DW. 2018. Demographic model testing reveals a history of divergence and gene flow for a glacially-tied stonefly in a changing post-Pleistocene landscape. Journal of Biogeography, 45:304-317.
A&SWeisrock, DavidPublicationHotaling S, Slabach BL, Weisrock DW. 2018. Next-generation teaching: a template for bringing genomic and bioinformatic tools into the classroom. Journal of Biological Education, 52:301-313.
A&SYang, Dong-ShengPublication

Zhang, S. Nyambo, and D.-S. Yang, “Mass-Analyzed Threshold Ionization Spectroscopy of lanthanide imide LnNH (Ln = La and Ce) Radicals from N-H Bond Activation of Ammonia”, J. Chem. Phys. 149, 234301/1-8 (2018).

A&SYang, Dong-ShengPublicationR. L. Calabro, D. –S. Yang, and D. Y. Kim, “Liquid-Phase Laser Ablation Synthesis of Graphene Quantum Dots from Carbon Nano-Onions: Comparison with Chemical Oxidation”, J. Colloid Interface Sci. 527, 132-140 (2018).
A&SYang, Dong-ShengPublicationW. Cao, D. Hewage, and D.-S. Yang, “Spectroscopy and Formation of Lanthanum-Hydrocarbon Radicals formed by Association and Carbon-Carbon Band Cleavage of Isoprene”, J. Chem. Phys. 148, 194302/1-9 (2018).
A&SYang, Dong-ShengPublicationW. Cao, Y.  Zhang, S. Nyambo, and D.-S. Yang, “Spectroscopy and Formation of Metal-Hydrocarbon Radicals from Lanthanum-Mediated C-H and C-C Band Activation of 1-Pentene and 2-Pentene” J. Chem. Phys. 149, 034303/1-9 (2018).
A&SYang, Dong-ShengPublicationW. Cao, D. Hewage, and D.-S. Yang, “Lanthanum-Mediated Dehydrogenation of Butenes: Spectroscopy and Formation of La(C4H6) isomer”, J. Chem. Phys. 148, 044312/1-8 (2018).
A&SYe, QiangConference ProceedingK. Helfrich, D. Willmott and Qiang Ye, Orthogonal Recurrent Neural Networks with Scaled Cayley Transform, Proceedings of the 35th International Conference on Machine Learning ( ICML 2018), PMLR 80:1969-1978, 2018."
CoPZhan, Chang-GuoPublication

Yao J, Chen X, Zheng F, Zhan CG, “Catalytic Reaction Mechanism for Drug Metabolism in Human Carboxylesterase-1: Cocaine Hydrolysis Pathway”, Mol Pharm. 2018 Sep 4;15(9):3871-3880.

CoPZhan, Chang-GuoPublicationYuan Y, Zheng F, Zhan CG, “Improved Prediction of Blood-Brain Barrier Permeability Through Machine Learning with Combined Use of Molecular Property-Based Descriptors and Fingerprints”, AAPS J. 2018 Mar 21;20(3):54. doi: 10.1208/s12248-018-0215-8




2017 Publications

DepartmentAuthor/sTypeReference
ECEAdams, Robert JPublicationR. Pfeiffer, J.C. Young, and R.J. Adams, ""Numerical Characterization of Divergence-Conforming Constrained Basis Functions for Surface Integral Equations,"" IEEE Trans. Antennas Propagat., , vol. 65, no. 4, pp. 1867-1874, April 2017. doi: 10.1109/TAP.2017.2669965
ECEAdams, Robert JPublicationJ. Adams and J.C. Young, ""Diagonal Factorization of Integral Equation Matrices Via Localizing Sources and Orthogonally Matched Receivers,"" Progress in Electromagnetics Research M, vol 56., pp. 1-10, April 2017. doi: 10.2528/PIERM16121201
ECEAdams, Robert JPublicationJ.C. Young and R.J. Adams, ""High-Order Divergence-Conforming Constrained Bases for Triangular Cells,"" IEEE Trans. Antennas Propagat., vol. 65, no. 9, pp. 4717-4727, Sept. 2017. doi: 10.1109/TAP.2017.2722826
ECEAdams, Robert JConference Proceeding

C. Chang, T. Wilkerson, R.J. Adams*, and J.C. Young, "Diagonal Localization-based Direct Solver for Volume Integral Equations and Capacitive Extraction ," 2017 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, TU-UB.2A.8, San Diego, CA, July 9 - July 14, 2017. (Abstract)

ECEAdams, Robert JConference Proceeding

J.C. Young*, S.D. Gedney, and R.J. Adams, "Time-Stepping Schemes for Quasi-Magnetostatic Analysis of Magnetic-Conducting Material," 2017 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, TH-UB.1P.2, San Diego, CA, July 9 - July 14, 2017. (Abstract)

ECEAdams, Robert JConference Proceeding

J.C. Young*, R. Pfeiffer, and R.J. Adams, "Alternative Constraints for Divergence-Conforming Constrained Basis Functions," 2017 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, TU-UB.1A.4, San Diego, CA, July 9 - July 14, 2017. (Abstract)

ECEAdams, Robert JConference Proceeding

R.J. Adams*, R. Thomas, and J.C. Young, "Sparse Solution of Integral Equation Formulations of Multiple Scattering Problems in a Directional Plane Wave Basis," 2017 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, TU-UB.2A.3, San Diego, CA, July 9 - July 14, 2017. (Abstract)

ECEAdams, Robert JConference ProceedingR.J. Adams*, R.J. Thomas, and J.C. Young, "Sparse Solution of Discrete Multiple Scattering Problems in a Directional Plane Wave Basis," 2017 International Conference on Electromagnetics in Advanced Applications, Verona, Italy, Sept. 11-15, 2017
CoPAnderson, BradPublication

T.-X. Xiang and B.D. Anderson, Molecular Dynamics of Amorphous Hydroxypropylmethylcellulose (HPMC) and its Mixtures with Felodipine and Water, J. Pharm. Sci., 106, 803-816 (2017).

CoEBrehm, ChristophPublication

C. Brehm “On Consistent Boundary Closures for Compact Finite-Difference WENO Schemes”, Journal of Computational Physics, 2017, Volume 334, 573-581

CoE

Brehm, ChristophPublication

C. Brehm, J.A. Housman, C. C. Kiris and F. Hutcheson “Four-Jet Impingement: Noise Characteristics and Simplified Acoustic Model”, International Journal of Heat and Fluid Flow, Volume 67, 43-58, 2017

CoEBrehm, ChristophConference Proceeding

A.P. Haas, O. M. F. Browne, H. F. Fasel, and C. Brehm “A Time-Spectral Numerical Jacobian Based Stability Solver for the Compressible Navier-Stokes Equations”, AIAA 2017-4520, incl. presentation 47th AIAA Fluid Dynamics Conference, 5-9 June, DenverCO

CoEBrehm, ChristophConference ProceedingO.M.F. Browne, A. Haas, H. Fasel, and C. Brehm “An Efficient Pulse Tracking Strategy for Hypersonic Transition Prediction”, AIAA 2017-3636, incl. presentation at 47th AIAA Fluid Dynamics Conference, 5-9 June, Denver, CO
Public HealthChen, LiPublication

Yang Y, Shelton BJ, Tucker TC, Li L, Kryscio RJ, Chen L. Estimation of exposure distribution adjusting for association between exposure level and detection limit. Statistics in Medicine. 2017 Aug 15;36(18):2935-2946.

A&SCrawford, Christopher BPublication

Broussard {\it et al.}, ``Detection System for Neutron $\beta$ Decay Correlations in the UCNB and Nab experiments'', %L. J. Broussard, B. A. Zeck, E. R. Adamek, S. Baeßler, N. Birge, M. Blatnik, J. D. Bowman, A. E. Brandt, M. Brown, J. Burkhart, N. B. Callahan, S. M. Clayton, C. Crawford, C. Cude-Woods, S. Currie, E. B. Dees, X. Ding, N. Fomin, E. Frlez, J. Fry, F. E. Gray, S. Hasan, K. P. Hickerson, J. Hoagland, A. T. Holley, T. M. Ito, A. Klein, H. Li, C.-Y. Liu, M. F. Makela, P. L. McGaughey, J. Mirabal-Martinez, C. L. Morris, J. D. Ortiz, R. W. Pattie Jr., S. I. Penttilä, B. Plaster, D. Počanić, J. C. Ramsey, A. Salas-Bacci, D. J. Salvat, A. Saunders, S. J. Seestrom, S. K. L. Sjue, A. P. Sprow, Z. Tang, R. B. Vogelaar, B. Vorndick, Z. Wang, W. Wei, J. Wexler, W. S. Wilburn, T. L. Womack, A. R. Young. \href{http://dx.doi.org/10.1016/j.nima.2016.12.030}{Nucl. Instr. Meth. {\bf A849}, 83 (2017)}, \href{http://arXiv.org/pdf/1607.02656.pdf}{arXiv:1607.02656} [physics.ins-det].

A&SCrawford, Christopher BConference Proceeding

``Hadronic Parity Violation'', Low-energy probes of new physics, MITP, Johannes Gutenbert University, Mainz, Germany, 2017-05-22.

A&SCrawford, Christopher BConference Proceedinghttp://iopscience.iop.org/article/10.1088/1742-6596/876/1/012005/meta}{J. Phys.:Conf. Series {\bf 876}, 012005 (2017)}.
A&SCrawford, Christopher BConference ProceedingJ. Fry {\it et al.}, ``The Nab Experiment: A Precision Measurement of Unpolarized Neutron Beta Decay'', \href{http://arxiv.org/abs/arXiv:1811.10047}{arXiv:1811.10047} [nucl-ex]. 2017
A&SCrawford, Christopher BConference Proceeding

``The Parity Violating Proton Asymmetry from Neutron Capture on Helium-3,'' DNP Fall Meeting, Pittsburgh, PA, 2017-10-27.

A&SDelong, LancePublication

“Dynamic origin of segment magnetization reversal in thin-‎film Penrose tilings”, Federico Montoncello, Loris Giovannini, Barry Farmer and Lance E. De Long, J. Magn. Magn. Mats. 423, 158-163 (2017).

A&SDelong, LancePublication“Macrospin reversals and spin wave softening in isolated nodes of Kagome-like structures: statics and dynamics”, F. Montoncello, L. Giovannini, J. B. Ketterson, W. Bang, L. E. DeLong and B. Farmer. Proceedings of INTERMAG Europe 2017, Dublin, Ireland (EU), April 24-28, 2017; 2017 IEEE International Magnetics Conference (INTERMAG), pp. 1-1 (2017).
A&SDelong, LanceConference Proceeding

"Macrospin reversals and spin wave softening in isolated nodes of Kagome-like structures: statics and dynamics”, F. Montoncello, L. Giovannini, J. B. Ketterson, W. Bang, L. E. DeLong and B. Farmer.  Contributed oral presentation at:  INTERMAG Europe 2017, Dublin, Ireland (EU), April 24-28, 2017.

Public HealthEllingson, SallyPublicationZhang X, Kucharski A, de Jong WA, Ellingson SR. Towards a better understanding of on and off target effects of the lymphocyte-specific kinase LCK for the development of novel and safer pharmaceuticals. Procedia Computer Science. 2017 Dec 31;108:1222-31.
A&SFerland, GaryPublication

T. P. Adhikari, A. Różańska, B. Czerny, K. Hryniewicz, and G. J. Ferland. 2017. The nature of Intermediate Line Region (ILR) in AGN. In Quasars at all Cosmic Epochs. Article 35, 35 pages. https://doi.org/10.5281/zenodo.571347

A&SFerland, GaryPublication[6] Tek P. Adhikari, Agata Różańska, Krzysztof Hryniewicz, Bozena Czerny, and Gary J. Ferland. 2017. On the Intermediate Line Region in AGNs. Frontiers in Astronomy and Space Sciences 4, Article 19 (Sep 2017), 19 pages. https://doi.org/10.3389/fspas.2017.00019 arXiv:astro-ph.GA/1709.07393
A&SFerland, GaryPublicationF. H. Cashman, V. P. Kulkarni, R. Kisielius, G. J. Ferland , and P. Bogdanovich. 2017. VizieR Online Data Catalog: Compilation of atomic data for key heavy elements (Cashman+, 2017). VizieR Online Data Catalog, Article J/ApJS/230/8 (Jun 2017), J/ApJS/230/8 pages.
A&SFerland, GaryPublicationFrances H. Cashman, Varsha P. Kulkarni, Romas Kisielius, Gary J. Ferland, and Pavel Bogdanovich. 2017. Atomic Data Revisions for Transitions Relevant to Observations of Interstellar, Circumgalactic, and Intergalactic Matter. Monthly Notices of the Royal Astronomical Societys 230, 1, Article 8 (May 2017), 8 pages. https://doi.org/10.3847/1538-4365/aa6d84 arXiv:astro-ph.GA/1701.04847
A&SFerland, GaryPublication

R. Edelson, J. Gelbord, E. Cackett, S. Connolly, C. Done, M. Fausnaugh, E. Gardner, N. Gehrels, M. Goad, K. Horne, I. McHardy, B. M. Peterson, S. Vaughan, M. Vestergaard, A. Breeveld, A. J. Barth, M. Bentz, M. Bottorff, W. N. Brandt, S. M. Crawford, E. D. Bonta, D. Emmanoulopoulos, P. Evans, R. F. Jaimes, A. V. Filippenko, G. Ferland , D. Grupe, M. Joner, J. Kennea, K. T. Korista, H. A. Krimm, G. Kriss, D. C. Leonard, S. Mathur, H. Netzer, J. Nousek, K. Page, E. Romero-Colmenero, M. Siegel, D. A. Starkey, T. Treu, H. A. Vogler, H. Winkler, and W. Zheng. 2017. VizieR Online Data Catalog:  2 Gary J. Ferland Publications, X-ray/UV Swift monitoring of NGC 4151 (Edelson+, 2017). VizieR Online Data Catalog, Article J/ApJ/840/41 (Nov 2017), J/ApJ/840/41 pages.

A&SFerland, GaryPublicationR. Edelson, J. Gelbord, E. Cackett, S. Connolly, C. Done, M. Fausnaugh, E. Gardner, N. Gehrels, M. Goad, K. Horne, I. McHardy, B. M. Peterson, S. Vaughan, M. Vestergaard, A. Breeveld, A. J. Barth, M. Bentz, M. Bottorff, W. N. Brandt, S. M. Crawford, E. Dalla Bontà, D. Emmanoulopoulos, P. Evans, R. Figuera Jaimes, A. V. Filippenko, G. Ferland , D. Grupe, M. Joner, J. Kennea, K. T. Korista, H. A. Krimm, G. Kriss, D. C. Leonard, S. Mathur, H. Netzer, J. Nousek, K. Page, E. Romero-Colmenero, M. Siegel, D. A. Starkey, T. Treu, H. A. Vogler, H. Winkler, and W. Zheng. 2017. Swift Monitoring of NGC 4151: Evidence for a Second X-Ray/UV Reprocessing. Monthly Notices of the Royal Astronomical Society 840, 1, Article 41 (May 2017), 41 pages. https://doi.org/10.3847/1538-4357/aa6890 arXiv:astro-ph.HE/1703.06901
A&SFerland, GaryPublicationGary Ferland. 2017. Plasma simulations that meet the challenges of HST & JWST Active Nuclei & Starburst observations. HST Proposal., 15018 pages.
A&SFerland, GaryPublication

Gary Ferland. 2017. Reading the Message in the Light: JWST IR to UV Spectroscopy at Low to High Redshift. NASA ATP Proposal., 17-ATP17-141 pages.

A&SFerland, GaryPublicationG. J. Ferland, M. Chatzikos, F. Guzmán, M. L. Lykins, P. A. M. van Hoof, R. J. R. Williams, N. P. Abel, N. R. Badnell, F. P. Keenan, R. L. Porter, and P. C. Stancil. 2017. The 2017 Release Cloudy. Monthly Notices of the Royal Astronomical Society 53 (Oct 2017), 385–438. arXiv:astro-ph.GA/1705.10877
A&SFerland, GaryPublicationF. Guzmán, N. R. Badnell, M. Chatzikos, P. A. M. van Hoof, R. J. R. Williams, and G. J. Ferland. 2017. Testing atomic collision theory with the two-photon continuum of astrophysical nebulae. Monthly Notices of the Royal Astronomical Society 467, 4 (Jun 2017), 3944–3950. https://doi.org/10.1093/mnras/stx269 arXiv:astro-ph.CO/1701.07913
A&SFerland, GaryPublicationF. Guzmán, N. R. Badnell, R. J. R. Williams, P. A. M. van Hoof, M. Chatzikos, and G. J. Ferland. 2017. H-, He-like recombination spectra - II. l-changing collisions for He Rydberg states. Monthly Notices of the Royal Astronomical Society 464, 1 (Jan 2017), 312–320. https://doi.org/10.1093/mnras/stw2304 arXiv:astro-ph.CO/1608.08947
A&SFerland, GaryPublicationSibasish Laha, Niall B. Tyndall, Francis P. Keenan, Connor P. Ballance, Catherine A. Ramsbottom, Gary J. Ferland , and Alan Hibbert. 2017. Emission Line Ratios of FE III as Astrophysical Plasma Diagnostics. Monthly Notices of the Royal Astronomical Society 841, 1, Article 3 (May 2017), 3 pages. https://doi.org/10.3847/1538-4357/aa7071 arXiv:astro-ph.GA/1705.00207
A&SFerland, GaryPublicationS. Mathur, A. Gupta, K. Page, R. W. Pogge, Y. Krongold, M. R. Goad, S. M. Adams, M. D. Anderson, P. Arévalo, A. J. Barth, C. Bazhaw, T. G. Beatty, M. C. Bentz, A. Bigley, S. Bisogni, G. A. Borman, T. A. Boroson, M. C. Bottorff,W. N. Brandt, A. A. Breeveld, J. E. Brown, J. S. Brown, E. M. Cackett, G. Canalizo, M. T. Carini, K. I. Clubb, J. M. Comerford, C. T. Coker, E. M. Corsini, D. M. Crenshaw, S. Croft, K. V. Croxall, E. Dalla Bontà, A. J. Deason, K. D. Denney, A. De Lorenzo-Cáceres, G. De Rosa, M. Dietrich, R. Edelson, J. Ely, M. Eracleous, P. A. Evans, M. M. Fausnaugh, G. J. Ferland, A. V. Filippenko, K. Flatland, O. D. Fox, E. L. Gates, N. Gehrels, S. Geier, J. M. Gelbord, V. Gorjian, J. E. Greene, C. J. Grier, D. Grupe, P. B. Hall, C. B. Henderson, S. Hicks, E. Holmbeck, T. W. S. Holoien, D. Horenstein, Keith Horne, T. Hutchison, M. Im, J. J. Jensen, C. A. Johnson, M. D. Joner, J. Jones, J. Kaastra, S. Kaspi, B. C. Kelly, P. L. Kelly, J. A. Kennea, M. Kim, S. Kim, S. C. Kim, A. King, S. A. Klimanov, C. S. Kochanek, K. T. Korista, G. A. Kriss, M. W. Lau, J. C. Lee, D. C. Leonard, M. Li, P. Lira, Z. Ma, F. MacInnis, E. R. Manne-Nicholas, M. A. Malkan, J. C. Mauerhan, R. McGurk, I. M. McHardy, C. Montouri, L. Morelli, A. Mosquera, D. Mudd, F. Muller-Sanchez, R. Musso, S. V. Nazarov, H. Netzer, M. L. Nguyen, R. P. Norris, J. A. Nousek, P. Ochner, D. N. Okhmat, B. Ou-Yang, A. Pancoast, I. Papadakis, J. R. Parks, L. Pei, B. M. Peterson, A. Pizzella, R. Poleski, J. U. Pott, S. E. Rafter, H. W. Rix, J. Runnoe, D. A. Saylor, J. S. Schimoia, K. Schnülle, S. G. Sergeev, B. J. Shappee, I. Shivvers, M. Siegel, G. V. Simonian, A. Siviero, A. Skielboe, G. Somers, M. Spencer, D. Starkey, D. J. Stevens, H. I. Sung, J. Tayar, N. Tejos, C. S. Turner, P. Uttley, J. Van Saders, M. Vestergaard, L. Vican, Jr. Villanueva, S., C. Villforth, Y. Weiss, J. H. Woo, H. Yan, S. Young, H. Yuk, W. Zheng, W. Zhu, and Y. Zu. 2017. Space Telescope and Optical Reverberation Mapping Project. VII. Understanding the Ultraviolet Anomaly in NGC 5548 with X-Ray Spectroscopy. Monthly Notices of the Royal Astronomical Society 846, 1, Article 55 (Sep 2017), 55 pages. https://doi.org/10.3847/1538-4357/aa832b arXiv:astro-ph.GA/1704.06345
A&SFerland, GaryPublication

C. R. O’Dell, G. J. Ferland, and M. Peimbert. 2017. Structure and physical conditions in the Huygens region of the Orion nebula. Monthly Notices of the Royal Astronomical Society 464, 4 (Feb 2017), 4835–4857. https://doi.org/10.1093/mnras/stw2713 arXiv:astro-ph.GA/1610.06595

A&SFerland, GaryPublicationC. R. O’Dell, W. Kollatschny, and G. J. Ferland. 2017. Which Stars Are Ionizing the Orion Nebula? Monthly Notices of the Royal Astronomical Society 837, 2, Article 151 (Mar 2017), 151 pages. https://doi.org/10.3847/1538-4357/aa6198
A&SFerland, GaryPublicationC. R. O’Dell, W. Kollatschny, and G. J. Ferland. 2017. Which Stars are Ionizing the Orion Nebula ? arXiv e-prints, Article arXiv:1703.06191 (Mar 2017), arXiv:1703.06191 pages. arXiv:astro-ph.GA/1703.06191
A&SFerland, GaryPublication

L. Pei, M. M. Fausnaugh, A. J. Barth, B. M. Peterson, M. C. Bentz, G. De Rosa, K. D. Denney, M. R. Goad, C. S. Kochanek, K. T. Korista, G. A. Kriss, R. W. Pogge, V. N. Bennert, M. Brotherton, K. I. Clubb, E. Dalla Bonta, A. V. Filippenko, J. E. Greene, C. J. Grier, M. Vestergaard, W. Zheng, S. M. Adams, T. G. Beatty, A. Bigley, J. E. Brown, J. S. Brown, G. Canalizo, J. M. Comerford, C. T. Coker, E. M. Corsini, S. Croft, K. V. Croxall, A. J. Deason, M. Eracleous, O. D. Fox, E. L. Gates, C. B. Henderson, E. Holmbeck, T.W. S. Holoien, J. J. Jensen, C. A. Johnson, P. L. Kelly, S. Kim, A. King, M.W. Lau, M. Li, C. Lochhaas, Z. Ma, E. R. Manne-Nicholas, J. C. Mauerhan, M. A. Malkan, R. McGurk, L. Morelli, A. Mosquera, D. Mudd, F. M. Sanchez, M. L. Nguyen, P. Ochner, B. Ou-Yang, A. Pancoast, M. T. Penny, A. Pizzella, R. Poleski, J. Runnoe, B. Scott, J. S. Schimoia, B. J. Shappee, I. Shivvers, G. V. Simonian, A. Siviero, G. Somers, D. J. Stevens, M. A. Strauss, J. Tayar, N. Tejos, T. Treu, J. van Saders, L. Vican, S. Villanueva, H. Yuk, N. L. Zakamska, W. Zhu, M. D. Anderson, P. Arevalo, C. Bazhaw, S. Bisogni, G. A. Borman, M. C. Bottorff, W. N. Brandt, A. A. Breeveld, E. M. Cackett, M. T. Carini, D. M. Crenshaw, A. de Lorenzo-Caceres, M. Dietrich, R. Edelson, N. V. Efimova, J. Ely, P. A. Evans, G. J. Ferland, K. Flatland, N. Gehrels, S. Geier, J. M. Gelbord, D. Grupe, A. Gupta, P. B. Hall, S. Hicks, D. Horenstein, K. Horne, T. Hutchison, M. Im, M. D. Joner, J. Jones, J. Kaastra, S. Kaspi, B. C. Kelly, J. A. Kennea, M. Kim, S. C. Kim, S. A. Klimanov, J. C. Lee, D. C. Leonard, P. Lira, F. Macinnis, S. Mathur, I. M. McHardy, C. Montouri, R. Musso, S. V. Nazarov, H. Netzer, R. P. Norris, J. A. Nousek, D. N. Okhmat, I. Papadakis, J. R. Parks, J. U. Pott, S. E. Rafter, H. W. Rix, D. A. Saylor, K. Schnulle, S. G. Sergeev, M. Siegel, A. Skielboe, M. Spencer, D. Starkey, H. I. Sung, K. G. Teems, C. S. Turner, P. Uttley, C. Villforth, Y. Weiss, J. H. Woo, H. Yan, S. Young, and Y. Zu. 2017. VizieR Online Data Catalog: Space telescope RM project. V. NGC5548 sp. monitoring (Pei+, 2017). VizieR Online Data Catalog, Article J/ApJ/837/131 (Oct 2017), J/ApJ/837/131 pages.

A&SFerland, GaryPublicationL. Pei, M. M. Fausnaugh, A. J. Barth, B. M. Peterson, M. C. Bentz, G. De Rosa, K. D. Denney, M. R. Goad, C. S. Kochanek, K. T. Korista, G. A. Kriss, R.W. Pogge, V. N. Bennert, M. Brotherton, K. I. Clubb, E. Dalla Bontà, A. V. Filippenko, J. E. Greene, C. J. Grier, M. Vestergaard, W. Zheng, Scott M. Adams, Thomas G. Beatty, A. Bigley, Jacob E. Brown, Jonathan S. Brown, G. Canalizo, J. M. Comerford, Carl T. Coker, E. M. Corsini, S. Croft, K. V. Croxall, A. J. Deason, Michael Eracleous, O. D. Fox, E. L. Gates, C. B. Henderson, E. Holmbeck, T. W. S. Holoien, J. J. Jensen, C. A. Johnson, P. L. Kelly, S. Kim, A. King, M. W. Lau, Miao Li, Cassandra Lochhaas, Zhiyuan Ma, E. R. Manne-Nicholas, J. C. Mauerhan, M. A. Malkan, R. McGurk, L. Morelli, Ana Mosquera, Dale Mudd, F. Muller Sanchez, M. L. Nguyen, P. Ochner, B. Ou-Yang, A. Pancoast, Matthew T. Penny, A. Pizzella, Radosław Poleski, Jessie Runnoe, B. Scott, Jaderson S. Schimoia, B. J. Shappee, I. Shivvers, Gregory V. Simonian, A. Siviero, Garrett Somers, Daniel J. Stevens, M. A. Strauss, Jamie Tayar, N. Tejos, T. Treu, J. Van Saders, L. Vican, Jr. Villanueva, S., H. Yuk, N. L. Zakamska, W. Zhu, M. D. Anderson, P. Arévalo, C. Bazhaw, S. Bisogni, G. A. Borman, M. C. Bottorff, W. N. Brandt, A. A. Breeveld, E. M. Cackett, M. T. Carini, D. M. Crenshaw, A. De Lorenzo-Cáceres, M. Dietrich, R. Edelson, N. V. Efimova, J. Ely, P. A. Evans, G. J. Ferland, K. Flatland, N. Gehrels, S. Geier, J. M. Gelbord, D. Grupe, A. Gupta, P. B. Hall, S. Hicks, D. Horenstein, Keith Horne, T. Hutchison, M. Im, M. D. Joner, J. Jones, J. Kaastra, S. Kaspi, B. C. Kelly, J. A. Kennea, M. Kim, S. C. Kim, S. A. Klimanov, J. C. Lee, D. C. Leonard, P. Lira, F. MacInnis, S. Mathur, I. M. McHardy, C. Montouri, R. Musso, S. V. Nazarov, H. Netzer, R. P. Norris, J. A. Nousek, D. N. Okhmat, I. Papadakis, J. R. Parks, J. U. Pott, S. E. Rafter, H. W. Rix, D. A. Saylor, K. Schnülle, S. G. Sergeev, M. Siegel, A. Skielboe, M. Spencer, D. Starkey, H. I. Sung, K. G. Teems, C. S. Turner, P. Uttley, C. Villforth, Y. Weiss, J. H. Woo, H. Yan, S. Young, and Y. Zu. 2017. Space Telescope and Optical Reverberation Mapping Project. V. Optical Spectroscopic Campaign and Emission-line Analysis for NGC 5548. Monthly Notices of the Royal Astronomical Society 837, 2, Article 131 (Mar 2017), 131 pages. https://doi.org/10.3847/1538-4357/aa5eb1 arXiv:astro-ph.GA/1702.01177
A&SFerland, GaryPublication

Gargi Shaw, G. J. Ferland, and I. Hubeny. 2017. The Validity of 21 cm Spin Temperature as a Kinetic Temperature Indicator in Atomic and Molecular Gas. Monthly Notices of the Royal Astronomical Society 843, 2, Article 149 (Jul 2017), 149 pages. https://doi.org/10.3847/1538-4357/aa7747 arXiv:astro-ph.GA/1706.01425

A&SFerland, GaryPublicationR. J. R. Williams, F. Guzmán, N. R. Badnell, P. A. M. van Hoof, M. Chatzikos, and G. J. Ferland. 2017. Thermodynamically-consistent semi-classical ℓ-  changing rates. Journal of Physics B Atomic Molecular Physics 50, 11, Article 115201 (Jun 2017), 115201 pages. https://doi.org/10.1088/1361-6455/aa6f58  arXiv:physics.atom-ph/1704.08722
A&SFerland, GaryPublicationChenwei Yang, Tinggui Wang, Gary J. Ferland, Liming Dou, Hongyan Zhou, Ning Jiang, and Zhenfeng Sheng. 2017. The Carbon and Nitrogen Abundance Ratio in the Broad Line Region of Tidal Disruption Events. Monthly Notices of the Royal Astronomical Society 846, 2, Article 150 (Sep 2017), 150 pages. https://doi.org/10.3847/1538-4357/aa8598 arXiv:astro-ph.GA/1708.03548
A&SFerland, GaryPublicationZiwei Zhang, Phillip C. Stancil, Renata Cumbee, and Gary J. Ferland . 2017. High excitation rovibrational molecular analysis in warm environments. In American Astronomical Society Meeting Abstracts #230 (American Astronomical Society Meeting Abstracts), Vol. 230. Article 208.04, 208.04 pages.
CoEFox, JamesPublication

Husic A., J. Fox, W. Ford, C. Agouridis, J. Currens, and C. Taylor. (2017). Sediment Carbon Source, Fate, and Transport in a Fluviokarst Watershed (Part 2): Numerical Model Development and Application, Journal of Hydrology, 10.1016/j.jhydrol.2017.03.059, 549 (2017) 208–219"

CoEFox, JamesConference Proceeding

Husic, A., J. Fox, W. Ford, C. Agouridis, J. Currens, C. Taylor. 2017. Nitrogen Fate in a Phreatic Karst Watershed: a Stable Isotope and Numerical Modeling Approach, American Geophysical Union Fall 2017 Meeting, New Orleans, Louisiana, December 10-15, 2017.

CoEFox, JamesConference ProceedingAl-Aamery, N., Mahoney, D.T., Fox, J.F. 2017. Climate change impacts on sediment transport in a lowland watershed system: controlling processes and projection, American Geophysical Union Fall 2017 Meeting, New Orleans, Louisiana, December 10-15, 2017.
CoEIonel, DanPublication

Rallabandi, V., Taran, N., Ionel, D. M., and Boldea, I. G., “MAGNUS: An Ultra-High Specific Torque PM Axial Flux Type Motor with Flux Focusing and Modulation”, Proceedings, IEEE ECCE 2017, Cincinnati, OH, doi: 10.1109/ECCE.2017.8095930, pp. 1234-1239 (Oct 2017)

CoEIonel, DanPublicationRallabandi, V., Taran, N., Ionel, D. M., and Zhou, P., “Inductance Testing According to the New IEEE Std 1812: Application and Possible Extensions for IPM Machines”, Proceedings, IEEE ECCE 2017, Cincinnati, OH, doi: 10.1109/ECCE.2017.8096742, pp. 4302-4308 (Oct 2017)
CoEIonel, DanPublicationTaran, N., Rallabandi, V., Ionel, D. M., and Heins, G., “A Comparative Study of Coreless and Conventional Axial Flux Permanent Magnet Synchronous Machines for Low and High Speed Operation”, Proceedings, IEEE ECCE 2017, Cincinnati, OH, doi: 10.1109/ECCE.2017.8095799, pp. 321-327 (Oct 2017)
CoEIonel, DanPublicationRallabandi, V., Taran, N., and Ionel, D. M., “Multilayer Concentrated Windings for Axial Flux PM Machines”, IEEE Transactions on Magnetics, Vol. 53, No. 6, doi: 10.1109/TMAG.2017.2661312, pp. 1-4 (2017)
CoEIonel, DanPublicationRallabandi, V., Taran, N., Ionel, D. M., and Eastham, J. F., “Coreless Multidisc Axial Flux PM Machine with Carbon Nanotube Windings”, IEEE Transactions on Magnetics, Vol. 53, No. 6, doi: 10.1109/TMAG.2017.2660526, pp. 1-4 (2017)
CoEIonel, DanPublicationRallabandi, V., Taran, N., Ionel, D. M., and Boldea, I. G., “Axial-Flux PM Synchronous Machines with Air-gap Profiling and very High Ratio of Spoke Rotor Poles to Stator Concentrated Coils”, Proceedings, IEEE IEMDC 2017, Miami, FL, doi: 10.1109/IEMDC.2017.8002371, 7p (May 2017)
CoEIonel, DanPublicationTaran, N., Rallabandi, V., Heins, G., and Ionel, D. M., “A Comparative Study of Conventional and Coreless Axial Flux Permanent Magnet Synchronous Motors for Solar Cars”, Proceedings, IEEE IEMDC 2017, Miami, FL, doi: 10.1109/IEMDC.2017.8002407, 7p (May 2017)
CoEIonel, DanConference ProceedingElectric Machines - Optimal Design of Motor Topologies""; Sponsor: Regal Beloit Corp; Jan 2017 - Mar 2020; PI: Dan M. Ionel
CoEJacobs, NathanPublication

Workman S., Zhai M., Crandall D., Jacobs N. 2017. A Unified Model for Near/Remote Sensing. In: IEEE International Conference on Computer Vision (ICCV).

CoEJacobs, NathanPublicationWeilian Song, Tawfiq Salem, Nathan Jacobs, and Michael Johnson, Detecting the presence of bird vocalizations in audio segments using a convolutional neural network architecture. In International Symposium on Acoustic Communication by Animals, 2017."
CoEJohnson, Michael TConference ProceedingWeilian Song, Tawfiq Salem, Nathan Jacobs, Michael T. Johnson, Detecting the Presence of Bird Vocalizations in Audio Segments Using a Convolutional Neural Network Architecture, 4th International Symposium on Acoustic Communication by Animals, Omaha, NE, July 2017."
A&SKaul, RibhuPublicationNew easy-plane CPN􀀀1 xed points, Jonathan D'Emidio, Ribhu K. Kaul, Phys. Rev. Lett. 118, 187202 (2017) http://arxiv.org/abs/1610.07702 http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.118.187202
A&SKekenes-Huskey, Pete PublicationComputational modeling of amylin-induced calcium dysregulation in rat ventricular cardiomyocytes. Stewart BD, Scott CE, McCoy TP, Yin G, Despa F, Despa S, Kekenes-Huskey PM. Cell Calcium. 2018 May;71:65-74. doi: 10.1016/j.ceca.2017.11.006. Epub 2017 Dec 8.
BELamarche, Carlos E Publication

Harding, M., and C. Lamarche, 2017. Penalized Quantile Regression with Semiparametric Correlated Effects: An Application with Heterogeneous Preferences. Journal of Applied Econometrics 32, pp. 342-358

BELamarche, Carlos E PublicationDe Silva, D., G. Kosmopoulou, and C. Lamarche, 2017. Subcontracting and the Survival of Plants in the Road Construction Industry: A Panel Quantile Regression Analysis. Journal of Economic Behavior and Organization 137, pp. 113-131
BELamarche, Carlos E Conference ProceedingHarding, M., C. Lamarche and M. H. Pesaran 2017, Penalized Forecasting in Panel Data Models: Predicting Household Electricity Demand from Smart Meter Data (working paper)"
A&SLinnen, CatherinePublication

Bagley, R.K.*, V.C. Sousa, M.L. Niemiller***, and C.R. Linnen. 2017. History, geography and host use shape genomewide patterns of genetic differentiation in the redheaded pine sawfly (Neodiprion lecontei). Molecular Ecology 26: 1022-1044. - Selected for journal cover image

A&SLinnen, CatherinePublicationMallarino, R.M., T. Linden, C.R. Linnen, and H.E. Hoekstra. 2017. The role of isoforms in the evolution of convergent pigmentation in Peromyscus mice. Molecular Ecology 26: 245-258.
A&SLinnen, CatherinePublicationTerbot, J.W.* and C.R. Linnen. Correlated evolution of larval gregariousness and maternal egg clumping in eastern North American Neodiprion. (pending) 2017
A&SLinnen, CatherineConference Proceeding

2017 Entomological Society of America, “Combining Ecology, Evolution, and Genomics to Study Complex Insect Phenotypes” Symposium, Denver, CO

A&SLinnen, CatherineConference Proceeding

2017 Society for Molecular Biology and Evolution annual meeting (Austin, TX) “Is specialization driven by loss-of-function mutations? Comparing chemoreceptor gene evolution in a generalist/specialist pair of pine sawflies (Hymenoptera)” (*K. Vertacnik, and C. Linnen) [invited poster]

A&SLinnen, CatherineConference Proceeding2017 University of Kentucky Showcase of Undergraduate Scholars (Lexington, KY) “Annotation of ionotropic receptor genes in the Neodiprion lecontei draft genome” (**M. Gershtenson, *K. Vertacnik, and C. Linnen) [poster]"
A&SLinnen, CatherineConference Proceeding2017 Entomological Society of America, “Arthropod genomics” Symposium, Denver, CO
A&SLinnen, CatherineConference Proceeding2017 Entomological Society of America, “Genomics of adaptation: linking the next generation of genome-wide analysis to understand and manage complex traits” Symposium, Denver, CO
CoPLodder, RobertPublication

M.V. Tiitto and R.A. Lodder, Therapeutic Video Games for Attention Deficit Hyperactivity Disorder (ADHD) WebmedCentral PEDIATRICS 2017, WMC005330

CoPLodder, RobertPublicationM.V. Tiitto, R. Smith, A. Banfield, C.M. Ensor, and R.A. Lodder, A Pilot Study of a Device and Drug Therapy for ADHD, WebmedCentral PEDIATRICS 2017, WMC005354
CoPLodder, RobertPublicationLodder, Robert A. ""Data-Driven Design of an Ebola Therapeutic."" Procedia Computer Science 108 (2017): 1612-1621.
CoPLodder, RobertPublicationDouglas, Craig C., and Robert A. Lodder. "Human Identification and Localization by Robots in Collaborative Environments." Procedia Computer Science 108 (2017): 1602-1611.
CoEMcDonough, JamesConference Proceeding

American Physical Society Division of Fluid Dynamics (2017), Published abstract and presentation, “Filter-induced bifurcations of Navier–Stokes solutions”, McDonough J. M., Ziaei Ali Naghi, Nikou Neda Sheikhrezazadeh

CoEMcDonough, JamesConference Proceeding29th International Conference on Parallel Computational Fluid Dynamics Parallel CFD2017, “Parallelization of Firebrand transport in wildland fires”, J. M. McDonough and Tingting Tang.
A&SMcLetchie, D. NicholasConference Proceeding

2017 Rose A. Marks* and D. Nicholas Mcletchie. Dehydration tolerance in a tropical liverwort: genomic patterns. XIX International Botanical Congress, Shenzhen, China.

A&SMcLetchie, D. NicholasConference Proceedng2017 Rose A. Marks* and D. Nicholas Mcletchie. Dehydration tolerance in a tropical liverwort: genomic patterns. Kentucky Academy of Science Annual Meeting, Murray State University, Murry, KY.
A&SOdom, SusanPublication

“A Stable Two-Electron-Donating Phenothiazine for Application in Nonaqueous Redox Flow Batteries.” Kowalski, J.A.; Casselman, M.D.; Kaur, A.P.; Milshtein, J.D.; Elliott, C.F.; Modekrutti, S.; Attanayake, N.H.; Zhang, N.; Parkin, S.R.; Risko, C.; Brushett, F.R.;* Odom, S.A.* Journal of Materials Chemistry A, 2017, 5, 24371-24379. DOI 10.1039/C7TA05883G

A&SOdom, SusanPublication

“Beyond the Hammett Effect: Using Strain to Alter the Landscape of Electrochemical Potentials.” Casselman, M.D.; Elliott, C.F.; Modekrutti, S.; Zhang, P.; Parkin, S.R.; Risko, C.;* Odom, S.A.* ChemPhysChem, 2017, 18, 2142–2146. DOI: 10.1002/cphc.201700607

AGPalli, Subba RPublication

Roy A, George S, Palli SR. Multiple functions of CREB-binding protein during postembryonic development: identification of target genes. BMC Genomics. 2017 Dec 29;18(1):996. doi: 10.1186/s12864-017-4373-3. PubMed PMID: 29284404; PubMed Central PMCID: PMC5747157.

AGPalli, Subba RPublicationKalsi M, Palli SR. Cap n collar transcription factor regulates multiple genes coding for proteins involved in insecticide detoxification in the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol. 2017 Nov;90:43-52. doi: 10.1016/j.ibmb.2017.09.009. Epub 2017 Sep 23. PubMed PMID: 28951207.
AGPalli, Subba RPublicationKalsi M, Palli SR. Transcription factor cap n collar C regulates multiple cytochrome P450 genes conferring adaptation to potato plant allelochemicals and resistance to imidacloprid in Leptinotarsa decemlineata (Say). Insect Biochem Mol Biol. 2017 Apr;83:1-12. doi: 10.1016/j.ibmb.2017.02.002. Epub 2017 Feb 9. PubMed PMID: 28189748.
CoEPayne, Christina MPublications

Goedegebuur*, L. Dankmeyer, P. Gualfetti, S. Karkehabadi, H. Hansson, S. Jana, V. Huynh, B. R. Kelemen, P. Kruithof, E. A. Larenas, P. J. M. Teunissen, J. Ståhlberg, C. M. Payne*, C. Mitchinson, and M. Sandgren*, “Improving the thermal stability of cellobiohydrolase Cel7A from Hypocrea jecorina by directed evolution,” J. Biol. Chem., 42, 17418-17430 (2017).

CoEPayne, Christina MPublicationsI. Geronimo, S. Nigam, and C. M. Payne*, “Desulfination by 2’-hydroxybiphenyl-2-sulfinate desulfinase proceeds via electrophilic aromatic substitution by the Cys27 proton,” Chem. Sci., 8, 5078-5086 (2017).
CoEPayne, Christina MPublicationsA. A. Kognole and C. M. Payne*, “Inhibition of mammalian glycoprotein YKL-40: Identification of the physiological ligand,” J. Biol. Chem., 292(7), 2624-2636 (2017).
CoEPayne, Christina MPublications

Y. Yu, I. Fursule, L. C. Mills, D. L. Englert, B. J. Berron, and C. M. Payne*, “CHARMM force field parameters for 2’-hydroxybiphenyl-2-sulfinate, 2-hydroxybiphenyl, and related analogs,” J. Mol. Graphics Modell., 72, 32-42 (2017).

CoEPennell, Kelly GCVShirazi, E. & Pennell, K.G. (2017). Three-Dimensional Vapor Intrusion Modeling Approach that Combines Wind and Stack Effects on Indoor, Atmospheric, and Subsurface Domains. Environmental Science: Processes and Impacts, 19(12), pp. 1594-1607.
AGRavat, DhananjayConference ProceedingRavat, D., M. Purucker, N. Olsen, C.C. Finlay, 2017, Global High Resolution Crustal Magnetic Field Mapping at the Surface of the Moon from Lunar Prospector and SELENE/Kaguya Satellites, 2017 Fall Meeting, AGU, New Orleans, LA, 10-15 Dec.
CoERenfro, Michael WPublicationGrib, S. W. and Renfro, M. W. (2017). Two dimensional advective heat flux estimation from velocity measurements. Combustion and Flame, v. 184, 261-272."
A&SRisko, ChadPublication

A Stable Two-Electron-Donating Phenothiazine for Application in Nonaqueous Redox Flow Batteries. J.A. Kowalski, M.D. Casselman, A.P. Kaur, J.D. Milshtein, C.F. Elliott, S. Modekrutti, N.H. Attanayake, N. Zhang, S.R. Parkin, C. Risko, F.R. Brushett & S.A. Odom. Journal of Materials Chemistry A (2017) 5, 24371-24379. DOI: 10.1039/c7ta05883g

A&SRisko, ChadPublicationUnusual Electronic Structure of the Donor-Acceptor Cocrystal Formed by Dithieno[3,2-a:2',3'-c]phenazine and 7,7,8,8-Tetracyanoquinodimethane. Q. Ai, Y.A. Getmanenko, K. Jarolimek, L.R. Castaneda-Perea, T.V. Timofeeva & C. Risko. Journal of Physical Chemistry Letters (2017) 8, 4510-4515. DOI: 10.1021/acs.jpclett.7b01816
A&SRisko, ChadPublicationAn Unsymmetrical Non-Fullerene Acceptor: Synthesis via Direct Heteroarylation, Self-Assembly, and Utility as a Low Energy Absorber in Organic Photovoltaic Cells. A.J. Payne, S. Li, S.V. Dayneko, C. Risko & G.C. Welch. Chemical Communications (2017) 53, 10168-10171. DOI: 10.1039/c7cc05836e
A&SRisko, ChadPublicationCrossover from Band-Like to Thermally Activated Charge Transport in Organic Transistors due to Strain-Induced Traps. Y. Mei, P.J. Diemer, M.R. Niazi, R.K. Hallani, K. Jarolimek, C.S. Day, C. Risko, J.E. Anthony, A. Amassian & O.D. Jurchescu. Proceedings of the National Academy of Sciences of the United States of America (2017) 114, E6739-E6748. DOI: 10.1073/pnas.1705164114
A&SRisko, ChadPublicationBeyond the Hammett Effect: Using Strain to Alter the Landscape of Electrochemical Potentials. M.D. Casselman, C.F. Elliott, S. Modekrutti, P.L. Zhang, S.R. Parkin, C. Risko & S.A. Odom. ChemPhysChem (2017) 18, 2142-2146. DOI: 10.1002/cphc.201700607
A&SRisko, ChadPublicationTheory-Driven Insight into the Crystal Packing of Trialkylsilylethynyl Pentacenes. K.J. Thorley, T.W. Finn, K. Jarolimek, J.E. Anthony & C. Risko. Chemistry of Materials (2017) 29, 2502-2512. DOI: 10.1021/acs.chemmater.6b04211
A&SSmith, Jeramiah JPublication

Marks RA, Smith JJ, Cronk Q, McLetchie DN (2017) Variation in the Bacteriome of the Tropical Liverwort, Marchantia inflexa, Between the Sexes and Across Habitats. Symbiosis, 75: 93-101.

A&SSmith, Jeramiah JPublicationWoodcock MR, Vaughn-Wolfe J, Elias A, Kump DK, Kendall KD, Timoshevskaya N, Timoshevskiy V, Perry DW, Smith JJ, Spiewak JE, Parichy DM, Voss SR (2017) Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum. Scientific Reports, 7:6.
AGTsyusko, OlgaConference Proceeding

Wamucho Anye, Olga Tsyusko, Jason Unrine. Investigating multigenerational effects of silver nanoparticles in Caenorhabditis elegans: A toxicogenomic approach. TechConnect Innovation conference and Expo, May 2017, Washington DC.

AGTsyusko, OlgaConference ProceedingWamucho Anye, Olga Tsyusko, Jason Unrine. Genetic and epigenetic mutations in Caenorhabditis elegans after multiple generations of exposure to pristine and sulfidized silver nanoparticles. Center for the Environmental Implications of Nanotechnology (CEINT) Internal meeting. Duke University, April 2017, Duke University, Durham NC.
AGTsyusko, OlgaConference Proceeding

Wamucho Anye¸ Olga Tsyusko, Jason Unrine. Genetic mutations in Caenorhabditis elegans after multiple generations of exposure to pristine and sulfidized silver nanoparticles. Tracy Farmer Institute for Sustainability and the Environment (FTISE) Forum, December, 2017, University of Kentucky, Lexington KY."

CoMVoss, Stephen RPublication

Marks RA, Smith JJ, Cronk Q, McLetchie DN (2017) Variation in the Bacteriome of the Tropical Liverwort, Marchantia inflexa, Between the Sexes and Across Habitats. Symbiosis, 75: 93-101.

CoMVoss, Stephen RPublicationWoodcock MR, Vaughn-Wolfe J, Elias A, Kump DK, Kendall KD, Timoshevskaya N, Timoshevskiy V, Perry DW, Smith JJ, Spiewak JE, Parichy DM, Voss SR (2017) Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum. Scientific Reports, 7:6.
A&SWeisrock, DavidPublicationNunziata SO, Lance S, Scott D, Lemmon EM, Weisrock DW. 2017. Genomic data detect corresponding signatures of very recent population expansion in two species of salamanders affected by recent climate change. Molecular Ecology, 26:1060-1074.
A&SYang, Dong-ShengPublication

Silva, W. Cao, and D.-S. Yang, “Low-Energy Photoelectron Imaging Spectroscopy of Lan(benzene) ( n = 1 and 2)”, J. Phys. Chem. A 121, 8440-8447 (2017).

A&SYang, Dong-ShengPublicationW. Cao, D. Hewage, and D. –S. Yang, “Lanthanum-Mediated Dehydrogenation of 1- and 2-Butynes: Spectroscopy and Formation of La(C4H4) Isomers”, J. Phys. Chem. A 147, 064303/1-9 (2017).
A&SYang, Dong-ShengPublicationD. Hewage, W. Cao, S. Kumari, R. Silva, and D.-S. Yang, “Spectroscopy and Formation of Lanthanum-Hydrocarbon Radicals formed by C-C Bond Cleavage and Coupling of Propene”, J. Chem. Phys. 146, 184304/1-8 (2017).
A&SYang, Dong-ShengPublicationS. Kumari, W. Cao, D. Hewage, R. Silva, and D. -S. Yang, ""Mass-Analyzed Threshold Ionization Spectroscopy of Lanthanum-Hydrocarbon Radicals Formed by C-H Bond Activation of Propene”, J. Chem. Phys. 146, 074305/1-8 (2017).
A&SYang, Dong-ShengPublicationD. Hewage, W. Cao, J. H. Kim, Y. Wang, Y. Liu, and D. –S. Yang, “Spectroscopic Characterization of Nonconcerted [4+2] Cycloaddition of 1,3-Butadiene with Lanthanacyclopropene to form Lanthanum-Benzene in the Gas Phase”, J. Phys. Chem. A 121, 1233-1239 (2017).
CoPZhan, Chang-GuoPublicationZhou Z, Yuan Y, Zhou S, Ding K, Zheng F, Zhan CG “Selective inhibitors of human mPGES-1 from structure-based computational screening”. Bioorg Med Chem Lett. 2017 Aug 15;27(16):3739-3743
























































2016 Publications

DepartmentAuthor/sTypeReference
ECEAdams, Robert JConference ProceedingS.D. Gedney*, J.C. Young, R.J. Adams, C.S. Schneider, "A Quasi-Magnetostatic Volume Integral Method for Simulating Non-Linear Hysteretic and Magnetostrictive Materials," 2016 USNC-URSI Radio Science Meeting, B1-5, Boulder, Colorado, January 6-9, 2016. (Abstract)
ECEAdams, Robert JConference Proceeding

R. Pfeiffer*, J. Young, R. Adams, "Constrained Divergence-Conforming Bases," 2016 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, MO-A3.1P.6, San Juan, Puerto Rico, June 26-July 1, 2016.

ECEAdams, Robert JConference Proceeding

J. Cheng, J. Young, R. Adams*, S. Gedney, "Parallel Sparse Fill and Factorization of a Discrete Magnetostatic Volume Integral Equation on Non-Uniform Meshes," 2016 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, WE-UB.4A.4, San Juan, Puerto Rico, June 26-July 1, 2016. (Abstract)

ECE

Adams, Robert JConference ProceedingR.J. Adams* and J.C. Young, "A Diagonal Factorization for Integral Equation Matrices," 2016 International Conference on Electromagnetics in Advanced Applications, Session 26, Cairns, Australia, Sept. 19-23, 2016.

CoP

Anderson, BradPublicationB.D. Anderson and T.-X. Xiang, Molecular Dynamics Simulations of Amorphous Systems, in “Computational Pharmaceutical Solid State Chemistry”, Y. Abramov, ed., Wiley, ISBN: 978-1-118-70074-7, 424 pages, 2016.

CoE

Brehm, ChristophPublication

M.F. Barad, C. Brehm, C.C. Kiris, and R. Biswak, “Parallel Adaptive High-Order CFD Simulations Char- acterising SOFIA Cavity Acoustics”, International Journal of Computational Fluid Dynamics, 2016, Vol- ume 30(6), 437–443

CoE

Brehm, ChristophPublicationC. Kiris, M. Barad, J. Housman, C. Brehm, E. Sozer, and S. Moini-Yekta “The LAVA Computational Fluid Dynamics Solver”, Aerospace Science and Technology, 2016, Volume 55, 189-219

CoE

Brehm, ChristophPublicationC. Brehm, J. A. Housman, and C. C. Kiris “Noise Generation Mechanisms for a Supersonic Jet Impinging on an Inclined Plate”, Journal of Fluid Mechanics, 2016, Volume 797, 802-850
CoEBrehm, ChristophConference Proceeding

Brehm, M. Barad and C. Kiris “Open Rotor Computational Aeroacoustic Analysis with an Immersed Boundary Method”, AIAA 2016-0815, incl. presentation at 54th AIAA Aerospace Sciences Meeting, AIAA SciTech, 4-8 January, San Diego, CA

CoEBrehm, ChristophConference ProceedingC. Brehm, M. Barad and C. Kiris “An Immersed Boundary Method for Solving the Compressible Navier- Stokes Equations with Fluid-Structure Interaction”, AIAA 2016, incl. presentation at 34th AIAA Applied Aerodynamics Conference, 15-17 June, Washington, DC CONFERENCE PRESENTATIONS (Refereed Abstract, and Presentation) (DIRECT CONSEQUENCE OF COMPUTING RESOURCES PROVIDED BY UK)
CoECramer, Aaron MPublicationM. Liu and A. M. Cramer, “Genetic algorithm with integrated computing budget allocation for stochastic optimization,” Int. J. Metaheuristics, vol. 5, no. 2, pp. 115–135, Nov. 2016."
A&SCrawford, Christopher BConference Proceeding

``Parity Violation in Hadronic Systems,'' 39th Symposium on Nuclear Physics, Cocoyoc, Mexico, 2016-01-08.

A&SCrawford, Christopher BConference Proceeding``A New Era in Discrete Hadronic Symmetries,'' Symmetry Tests In Nuclei And Atoms, KITP, U.C. Santa Barbara CA, 2016-09-22.
A&SCrawford, Christopher BConference Proceeding``A New Era in Discrete Hadronic Symmetries,'' DNP Fall Meeting, Vancouver, BC, Canada, 2016-10-14.
A&SDelong, LanceConference Proceeding“Dynamic Origin of Segment ‎Magnetization Reversal in Penrose Quasicrystals”, F. Montoncello, L. Giovannini, B.W. Farmer and L.E. De Long, oral contributed talk at:  13th Joint MMM-Intermag Conference, San ‎Diego, CA, (USA), January 11-15, 2016.‎
Public HealthEllingson, SallyPublication

Zhang X, Ellingson S. Computationally characterizing genomic pipelines using high-confident call sets. Procedia Computer Science. 2016;80:1023-32.

Public HealthEllingson, SallyPublicationEllingson SR, and Fardo D. Automated quality control for genome wide association studies. F1000Research. 2016. (accepted)
Public HealthEllingson, SallyPublicationZhang X, Ellingson SR. Computationally characterizing genomic pipelines and benchmarking results using GATK best practices on the high performance computing cluster at the University of Kentucky. BMC Bioinformatics. 2016 (accepted abstract)
Public HealthEllingson, SallyPublication

Sabbir AKM, and Ellingson SR. Side-Effect Term Matching for Computational Adverse Drug Predictions. BMC Bioinformatics. 2016 (accepted abstract)

Public HealthEllingson, SallyPublicationEllingson SR. Accuracy and efficiency of sequence variation detection methods using high-confident variation calls. Journal of Clinical and Translational Science. 2016 (accepted abstract)
A&SFerland, GaryPublication

N. P. Abel, G. J. Ferland, C. R. O’Dell, and T. H. Troland . 2016. Orion’s Veil. IV. H2 Excitation and Geometry. Monthly Notices of the Royal Astronomical Society 819, 2, Article 136 (Mar 2016), 136 pages. https://doi.org/10.3847/0004-637X/819/2/136

A&SFerland, GaryPublication

T. P. Adhikari, A. Różańska, B. Czerny, K. Hryniewicz, and G. J. Ferland. 2016. The Intermediate-line Region in Active Galactic Nuclei. Monthly Notices of the Royal Astronomical Society 831, 1, Article 68 (Nov 2016), 68 pages. https://doi.org/10.3847/0004-637X/831/1/68 arXiv:astro-ph.GA/1606.00284

A&SFerland, GaryPublicationR. E. A. Canning, G. J. Ferland, A. C. Fabian, R. M. Johnstone, P. A. M. van Hoof, R. L. Porter, N. Werner, and R. J. R. Williams. 2016. Collisional excitation of [C II], [O I] and CO in massive galaxies. Monthly Notices of the Royal Astronomical Society 455, 3 (Jan 2016), 3042–3057. https://doi.org/10.1093/mnras/stv2390 arXiv:astro-ph.GA/1501.01081
A&SFerland, GaryPublicationA. C. Fabian, S. A. Walker, H. R. Russell, C. Pinto, R. E. A. Canning, P. Salome, J. S. Sand ers, G. B. Taylor, E. G. Zweibel, C. J. Conselice, F. Combes, C. S. Crawford, G. J. Ferland , III Gallagher, J. S., N. A. Hatch, R. M. Johnstone, and C. S. Reynolds. 2016. HST imaging of the dusty filaments and nucleus swirl in NGC4696 at the centre of the Centaurus Cluster. Monthly Notices of the Royal Astronomical Society 461, 1 (Sep 2016), 922–928.  https://doi.org/10.1093/mnras/stw1350 arXiv:astro-ph.GA/1606.02436
A&SFerland, GaryPublicationG. Ferland, L. Binette, M. Contini, J. Harrington, T. Kallman, H. Netzer, D. Péquignot, J. Raymond, R. Rubin, G. Shields, R. Sutherland, and S. Viegas. 2016. The Lexington Benchmarks for Numerical Simulations of Nebulae. arXiv e-prints, Article arXiv:1603.08902 (Mar 2016), arXiv:1603.08902 pages. arXiv:astro-ph.IM/1603.08902
A&SFerland, GaryPublicationG. J. Ferland, W. J. Henney, C. R. O’Dell, and M. Peimbert. 2016. The abundance discrepancy factor and tˆ2 in nebulae: are non-thermal electrons the culprits? Monthly Notices of the Royal Astronomical Society 52 (Oct 2016), 261. arXiv:astro-ph.SR/1605.03634
A&SFerland, GaryPublication

G. J. Ferland and R. J. R. Williams. 2016. Spectral Modeling in Astrophysics - The Physics of Non-equilibrium Clouds. 153–180. https://doi.org/10.1007/978-3-319-27514-7_7

A&SFerland, GaryPublicationM. R. Goad, K. T. Korista, G. De Rosa, G. A. Kriss, R. Edelson, A. J. Barth, G. J. Ferland, C. S. Kochanek, H. Netzer, B. M. Peterson, M. C. Bentz, S. Bisogni, D. M. Crenshaw, K. D. Denney, J. Ely, M. M. Fausnaugh, C. J. Grier, A. Gupta, K. D. Horne, J. Kaastra, A. Pancoast, L. Pei, R. W. Pogge, A. Skielboe, D. Starkey, M. Vestergaard, Y. Zu, M. D. Anderson, P. Arévalo, C. Bazhaw, G. A. Borman, T. A. Boroson, M. C. Bottorff, W. N. Brandt, A. A. Breeveld, B. J. Brewer, E. M. Cackett, M. T. Carini, K. V. Croxall, E. Dalla Bontà, A. De Lorenzo-Cáceres, M. Dietrich, N. V. Efimova, P. A. Evans, A. V. Filippenko, K. Flatland, N. Gehrels, S. Geier, J. M. Gelbord, L. Gonzalez, V. Gorjian, D. Grupe, P. B. Hall, S. Hicks, D. Horenstein, T. Hutchison, M. Im, J. J. Jensen, M. D. Joner, J. Jones, S. Kaspi, B. C. Kelly, J. A. Kennea, M. Kim, S. C. Kim, S. A. Klimanov, J. C. Lee, D. C. Leonard, P. Lira, F. MacInnis, E. R. Manne-Nicholas, S. Mathur, I. M. McHardy, C. Montouri, R. Musso, S. V. Nazarov, R. P. Norris, J. A. Nousek, D. N. Okhmat, I. Papadakis, J. R. Parks, J. U. Pott, S. E. Rafter, H. W. Rix, D. A. Saylor, J. S. Schimoia, K. Schnülle, S. G. Sergeev, M. Siegel, M. Spencer, H. I. Sung, K. G. Teems, T. Treu, C. S. Turner, P. Uttley, C. Villforth, Y. Weiss, J. H. Woo, H. Yan, S. Young, and W. K. Zheng. 2016. Space Telescope and Optical Reverberation Mapping Project. IV. Anomalous Behavior of the Broad Ultraviolet Emission Lines in NGC 5548. Monthly Notices of the Royal Astronomical Society 824, 1, Article 11 (Jun 2016), 11 pages. https://doi.org/10.3847/0004-637X/824/1/11 arXiv:astro-ph.GA/1603.08741
A&SFerland, GaryPublicationF. Guzmán, N. R. Badnell, R. J. R. Williams, P. A. M. van Hoof, M. Chatzikos, and G. J. Ferland. 2016. H, He-like recombination spectra - I. l-changing collisions for hydrogen. Monthly Notices of the Royal Astronomical Society 459, 4 (Jul 2016), 3498–3504. https://doi.org/10.1093/mnras/stw893 arXiv:astro-ph.GA/1604.03978
A&SFerland, GaryPublication

Sibasish Laha, Francis P. Keenan, Gary J. Ferland, Catherine A. Ramsbottom, and Kanti M. Aggarwal. 2016. Ultraviolet Emission Lines of Si II in Quasars: Investigating the “Si II Disaster”. Monthly Notices of the Royal Astronomical Society 825, 1, Article 28 (Jul 2016), 28 pages. https://doi.org/10.3847/0004-637X/825/1/28 arXiv:astro-ph.GA/1604.07364

A&SFerland, GaryPublicationSibasish Laha, Francis P. Keenan, Gary J. Ferland, Catherine A. Ramsbottom, Kanti M. Aggarwal, Thomas R. Ayres, Marios Chatzikos, Peter A. M. van Hoof, and Robin J. R. Williams. 2016. Ultraviolet emission lines of Si II in cool star and solar spectra. Monthly Notices of the Royal Astronomical Society 455, 3 (Jan 2016), 3405–3412. https://doi.org/10.1093/mnras/stv2566 arXiv:astro-ph.SR/1510.08755
A&SFerland, GaryPublicationC. R. O’Dell, G. J. Ferland, W. J. Henney, M. Peimbert, Ma. T. Garcia-Diaz, and R. H. Rubin. 2016. VizieR Online Data Catalog: Spectroscopy and HST imaging in ONC (O’Dell+, 2015). VizieR Online Data Catalog, Article J/AJ/150/108 (Feb 2016), J/AJ/150/108 pages.
A&SFerland, GaryPublicationChris T. Richardson, James T. Allen, Jack A. Baldwin, Paul C. Hewett, Gary J. Ferland, Anthony Crider, and Helen Meskhidze. 2016. Interpreting the ionization sequence in star-forming galaxy emission-line spectra. Monthly Notices of the Royal Astronomical Society 458, 1 (May 2016), 988–1012.    https://doi.org/10.1093/mnras/stw100 arXiv:astro-ph.GA/1601.03372
A&SFerland, GaryPublication

Phillip C. Stancil, Renata Cumbee, Ziwei Zhang, Kyle M. Walker, Benhui Yang, and Gary J. Ferland. 2016. Rovibrational CO analysis in PDR models. In American Astronomical Society Meeting Abstracts #227 (American Astronomical Society Meeting Abstracts), Vol. 227. Article 244.04, 244.04 pages.

A&SFerland, GaryPublicationTinggui Wang, Gary J. Ferland, Chenwei Yang, Huiyuan Wang, and Shaohua Zhang. 2016. Evidence for Fluorescent Fe II Emission from Extended Low Ionization Outflows in Obscured Quasars. Monthly Notices of the Royal Astronomical Society 824, 2, Article 106 (Jun 2016), 106 pages.  https://doi.org/10.3847/0004-637X/824/2/106 arXiv:astro-ph.HE/1609.00064
A&SFerland, GaryPublicationT. Wang, C. Yang, H. Wang, and G. Ferland. 2016. VizieR Online Data Catalog: Variability of SDSS broad absorption line QSOs (Wang+, 2015). VizieR Online Data Catalog, Article J/ApJ/814/150 (Mar 2016), J/ApJ/814/150 pages.
A&SFerland, GaryPublication

Xiang Wang, Gary J. Ferland, Jack A. Baldwin, Edwin D. Loh, Andy C. Fabian, and Robin Williams. 2016. Molecular hydrogen emission as a density and temperature indicator. In American Astronomical Society Meeting Abstracts #227 (American Astronomical Society Meeting Abstracts), Vol. 227. Article 424.02, 424.02 pages.

A&SFerland, GaryPublicationZiwei Zhang, Renata Cumbee, Kyle M. Walker, Phillip C. Stancil, and Gary J. Ferland. 2016. Ro-vibrational analysis of SiO in Warm Molecular Environments. In American Astronomical Society Meeting Abstracts #228 (American Astronomical Society Meeting Abstracts), Vol. 228. Article 116.04, 116.04 pages.
A&SFerland, GaryPublicationZiwei E. Zhang, R. S. Cumbee, P. C. Stancil, and G. J. Ferland . 2018. Ro-vibrational analysis of SiO in UV-irradiated environments. Molecular Astrophysics 13 (Nov 2018), 6–21. https://doi.org/10.1016/j.molap.2018.09.0016
CoEFox, JamesConference Proceeding

Matveeva, S. A. S. Mousavi, X. Zhang, T. M. Seigler, and J. B. Hoagg. “On the effects of changing reference command as humans learn to control dynamic systems,” Proc. Conf. Dec. Contr., pp. 1211–1216, Las Vegas, NV, December 2016. DOI: 10.1109/CDC.2016.7798431

CoEFox, JamesConference ProceedingS. A. S. Mousavi, X. Zhang, T. M. Seigler, and J. B. Hoagg. “Characteristics that make dynamic systems difficult for a human to control,” Proc. Amer. Contr. Conf., pp. 4391–4396, Boston, MA, July 2016. DOI: 10.1109/ACC.2016.7525613
CoEFox, JamesConference ProceedingX. Zhang and J. B. Hoagg, “Subsystem identification of multivariable feedforward and feedback systems,” Automatica, vol. 72, pp. 131–137, 2016. DOI: 10.1016/j.automatica.2016.05.027
CoEIonel, DanConference Proceeding

Low Frequency Electromechanical - Computational Studies”; Sponsor: ANSYS, Inc.; Jul 2016 – Aug 2020; PI: Dan M. Ionel

A&SKaul, RibhuPublication

First-order super uid to valence bond solid phase transitions in easy-plane SU(N) magnets for small-N", Jonathan D'Emidio and Ribhu K. Kaul.  Phys. Rev. B 93, 054406 (2016) http://arxiv.org/abs/1512.05082, http://journals.aps.org/prb/abstract/10.1103/PhysRevB.93.054406

A&SKaul, RibhuPublication

Interaction induced Dirac fermions from quadratic band touching in bilayer graphene"", Sumiran Pujari, Thomas C. Lang, Ganpathy Murthy and Ribhu K. Kaul. Phys. Rev. Lett. 117, 086404 (2016) http://arxiv.org/abs/1604.03876, http://dx.doi.org/10.1103/PhysRevLett.117.086404

A&SKekenes-Huskey, Pete Publication

Myofilament Calcium Sensitivity: Consequences of the Effective Concentration of Troponin I. Siddiqui JK, Tikunova SB, Walton SD, Liu B, Meyer M, de Tombe PP, Neilson N, Kekenes-Huskey PM, Salhi HE, Janssen PM, Biesiadecki BJ, Davis JP. Front Physiol. 2016 Dec 21;7:632. doi: 10.3389/fphys.2016.00632. eCollection 2016.

A&SKekenes-Huskey, Pete PublicationQuantifying the Influence of the Crowded Cytoplasm on Small Molecule Diffusion. Kekenes-Huskey PM, Scott CE, Atalay S. J Phys Chem B. 2016 Aug 25;120(33):8696-706. doi: 10.1021/acs.jpcb.6b03887. Epub 2016 Jul 7.
A&SKekenes-Huskey, Pete PublicationUnderstanding Ion Binding Affinity and Selectivity in β-Parvalbumin Using Molecular Dynamics and Mean Spherical Approximation Theory. Kucharski AN, Scott CE, Davis JP, Kekenes-Huskey PM. J Phys Chem B. 2016 Aug 25;120(33):8617-30. doi: 10.1021/acs.jpcb.6b02666. Epub 2016 Jul. 10.
A&SKekenes-Huskey, Pete PublicationMolecular Basis of S100A1 Activation at Saturating and Subsaturating Calcium Concentrations. Scott CE, Kekenes-Huskey PM. Biophys J. 2016 Apr 26;110(8):1907. doi: 10.1016/j.bpj.2016.03.032. Epub 2016 Apr 26. No abstract available.
A&SKekenes-Huskey, Pete PublicationMolecular Basis of S100A1 Activation at Saturating and Subsaturating Calcium Concentrations. Scott CE, Kekenes-Huskey PM. Biophys J. 2016 Mar 8;110(5):1052-63. doi: 10.1016/j.bpj.2015.12.040. Erratum in: Biophys J. 2016 Apr 26;110(8):1907.
BELamarche, Carlos E Publication

Harding, M., and C. Lamarche, 2016. Empowering Consumers through Smart Technology: Experimental Evidence on the Consequences of Time-of-Use Electricity Pricing, Journal of Policy Analysis and Management 35, pp. 906-931                                                                            

BELamarche, Carlos E PublicationKosmopoulou, G., C. Lamarche, and X. Zhou, 2016. Price Adjustment Policies and Firm Size, Economic Inquiry 54, pp. 895-906   
A&SLinnen, CatherinePublication

Thompson, K.L., C.R. Linnen, and L. Kubatko. 2016. Tree-based quantitative trait mapping in the presence of external covariates. Statistical Applications in Genetics & Molecular Biology 15: 473-490.

A&SLinnen, CatherineConference Proceeding

2016 XXV International Congress of Entomology, “Rapid Evolutionary Radiations in Insects” Symposium, Orlando, FL

A&SLinnen, CatherineConference Proceeding2016 University of California- Berkeley, “Genetics, Development, and Evolution” Symposium, Berkeley, CA - Keynote speaker
AGMacLeod, JamesPublicationZhang Y, Liu X, MacLeod JN, Liu J. DeepSplice: Deep Classification of Novel Splice Junctions Revealed by RNA-seq. IEEE International Conference on Bioinformatics and Biomedicine (BIBM). doi: 10.1109/BIBM.2016.7822541, 2016
CoEMcDonough, JamesPublication

International Journal of Bifurcation and Chaos, Vol. 26, No. 5 (2016) 1650086 (19 pages), Numerical Investigation of the “Poor Man’s Navier–Stokes Equations” with Darcy and Forchheimer Terms, Tingting Tang, Zhiyong Li, J. M. McDonough and P. D. Hislop

CoEMcDonough, JamesPublicationInternational Journal of Heat and Mass Transfer, 103 (2016) 984–996, “A theoretical model for the porosity–permeability relationship”, Tingting Tang and J. M. McDonough
CoEMcDonough, JamesConference Proceeding

28th International Conference on Parallel Computational Fluid Dynamics Parallel CFD2016 Published abstract and presentation, “PARALLEL PERFORMANCE OF AN IMPLICIT LES CODE FOR WILDLAND FIRE SPREAD”, TINGTING TANG AND J. M. MCDONOUGH

CoEMcDonough, JamesConference ProceedingAmerican Physical Society Division of Fluid Dynamics (2016), Published abstract and presentation, “Wildfire simulation using LES with synthetic-velocity SGS models”, Tingting Tang and J. M. McDonough.
BEMehra, AjayPublicationGibbons, D., Mehra, A., and Channagiri, T. ​2016. Emergent social networks of altruists and opportunists: Evidence from an organizational simulation. Paper presented in the Social Networks Professional Development Workshop at the Academy of Management meetings in Vancouver, Canada.
A&SOdom, SusanPublication“High-Current-Density, Long-Duration Cycling of Soluble Organic Active Species for Non-Aqueous Redox Flow Batteries.” Milshtein, J.D.; Kaur, A.P.; Casselman, M.D.; Kowalski, J.A.; Modekrutti, S.; Zhang, P.; Attanayake, N.H.; Elliott, C.F.; Parkin, S.R.; Risko, C.; Brushett, F.R.;* Odom, S.A.* Energy and Environmental Science, 2016, 9, 3531–3543. DOI: 10.1039/C6EE02027E"
AGPalli, Subba RPublicationGujar H, Palli SR. Juvenile hormone regulation of female reproduction in the common bed bug, Cimex lectularius. Sci Rep. 2016 Oct 20;6:35546. doi: 10.1038/srep35546. PubMed PMID: 27762340; PubMed Central PMCID: PMC5071884."
CoEPayne, Christina MPublications

Geronimo, C. A. Denning, W. E. Rogers, T. Othman, T. Huxford, D. K. Heidary, E. C. Glazer*, and C. M. Payne*, “Effect of mutation and substrate binding on the stability of cytochrome P450BM3 variants,” Biochemistry, 55(25), 3594-3606 (2016).

CoEPayne, Christina MPublicationsS. Jana‡, A. G. Hamre‡, P. Wildberger, M. M. Holen, V. G. H. Eijsink, G. T. Beckham, M. Sørlie*, and C. M. Payne*, “Aromatic-mediated carbohydrate recognition in processive Serratia marcescens chitinases,” J. Phys. Chem. B, 120(7), 1236-1249 (2016).
CoEPayne, Christina MPublicationsC. Wilkens‡, K. Auger‡, N. T. Anderson, D. A. Meekins, M. Raththagala, M. A. Hachem, C. M. Payne, M. S. Gentry*, and B. Svensson*, “Plant -glucan phosphatases SEX4 and LSF2 display different affinity for amylopectin and amylose,” FEBS Lett., 590(1), 118-128 (2016)."
CoEPennell, Kelly GCVPennell, K.G., Scammell, M.K., McClean, M.D., Suuberg, E. M., Ames, J., Moradi Gharehtapeh, A., Indeglia, P.A., Friguglietti, L., Shen, R., Yao, Y., Heiger-Bernays, W. (2016). “Field Data and Numerical Modeling: A Multiple Lines of Evidence Approach for Assessing Vapor Intrusion Exposure Risks” Science of the Total Environment, 556: 291-301."
AGRavat, DhananjayConference ProceedingRavat, D., L.C. Newman, 2016, Nature and characteristics of magnetization and magnetic sources in the South Pole – Aitken Basin (Invited), Advances in Lunar Magnetism, Cargese, Corsica, 1-4 June."
A&SRisko, ChadPublication

High-Current-Density, Long-Duration Cycling of Soluble Organic Active Species for Non-Aqueous Redox Flow Batteries. J.D. Milshtein, A.P. Kaur, M.D. Casselman, J.A. Kowalski, S. Modekrutti, P. Zhang, N.H. Attanayake, C.F. Elliott, S.R. Parkin, C. Risko, F.R. Brushett & S.A. Odom. Energy & Environmental Science (2016) 9, 3531-3543. DOI: 10.1039/C6EE02027E

A&SRisko, ChadPublicationIndacenodibenzothiophenes: Synthesis, Optoelectronic Properties and Materials Applications of Molecules with Strong Antiaromatic Character. J.L. Marshall, K. Uchida, C. Frederickson, C. Schutt, A.M. Zeidell, K.P. Goetz, T.W. Finn, K. Jarolimek, L. Zakharov, C. Risko, R. Herges, O.D. Jurchescu & M.M. Haley. Chemical Science (2016) 7, 5547-5558. DOI: 10.1039/C6SC00950F
A&SRisko, ChadPublicationOn the Impact of Isomer Structure and Packing Disorder in Thienoacene Organic Semiconductors. K.J. Thorley & C. Risko. Journal of Materials Chemistry C (2016) 4, 4040-4048. DOI: 10.1039/C5TC03900B
A&SRisko, ChadPublicationOvercharge Protection Above 4 V with Phenothiazine Redox Shuttles. A.P. Kaur, M.D. Casselman, C.F. Elliott, S.R. Parkin, C. Risko. & S.A. Odom.Journal of Materials Chemistry A (2016) 4, 5410-5414. DOI: 10.1039/C5TA10375D
A&SRisko, ChadPublicationParallel and Perpendicular Packing in Mixed-Stack Cocrystals of Trimeric Perfluoro-ortho-phenylene Mercury and Benzo[1,2 b:6,5 b′]dithiophene-4,5-dione Derivatives. R. Castañeda, M.S. Fonari, C. Risko, Y.A. Getmanenko & T.V. Timofeeva. Crystal Growth & Design (2016) 16, 2190-2200. DOI: 10.1021/acs.cgd.6b00001
A&SRisko, ChadPublicationMixed-Valence Cations of Di(carbazol-9-yl) Biphenyl, Tetrahydropyrene, and Pyrene Derivatives. B. Kaafarani, C. Risko, T. El-Assaad, A. El-Ballouli, S.R. Marder & S. Barlow. Journal of Physical Chemistry C (2016) 120, 3156-3166. DOI: 10.1021/acs.jpcc.5b11061
A&SRisko, ChadPublicationMapping the Configuration Dependence of Electronic Coupling in Organic Semiconductors. K.J. Thorley & C. Risko. Journal of Materials Chemistry C (2016) 4, 3825-3832. DOI: 10.1039/C5TC03765D"
A&SShlosman, IsaacPublication

Luo, Y., Nagamine, K., Shlosman, I., ``Direct Collapse to Supermassive Black Hole Seeds: Comparing the AMR and SPH Approaches,'' MNRAS, 459, 3217 (2016). 

A&SShlosman, IsaacPublicationR. Sadoun, I. Shlosman, J.-H. Choi and E. Romano-Diaz The Baryon Cycle at High Redshifts: Effects of Galactic Winds on Galaxy Evolution in Overdense and Average Regions, ApJ, 829, 71 (2016).  
A&SShlosman, IsaacPublicationShlosman, I., Choi, J.-H., Begelman, M.C., Nagamine, K., ``Supermassive Black Hole Seed Formation at High Redshifts: Long-Term Evolution of the Direct Collapse,'' MNRAS, 456, 500 (2016).
A&SShlosman, IsaacPublicationS. Fujita, N. Kawakatu and I. Shlosman AGN Jet Power, Formation of X-ray Cavities, and FR I/II Dichotomy in Galaxy Clusters, PASJ, 68, 26 (2016)
A&SShlosman, IsaacPublicationS. Fujita, N. Kawakatu, I. Shlosman and H. Ito The Young Radio Lobe of 3C 84: Inferred Gas Properties in the Central 10 Parsec, MNRAS, 455, 2289(2016).
A&SSmith, Jeramiah JPublication

Timoshevskiy VA, Herdy JR, Keinath MC, Smith JJ* (2016) Cellular and molecular features of developmentally programmed genome rearrangement in a vertebrate (sea lamprey: Petromyzon marinus). PLoS Genetics, 12:e1006103.

A&SSmith, Jeramiah JPublicationBryant SR, Herdy JR, Amemiya CT, Smith JJ* (2016) Characterization of somatically-eliminated genes during development: Lamprey (Petromyzon marinus). Molecular Biology and Evolution, 33:2337-2344.
A&SSmith, Jeramiah JPublicationKeinath MC, Voss SR, Tsonis PA, Smith JJ* (2016) A linkage map for the newt Notophthalmus viridescens: Insights in vertebrate genome and chromosome evolution. Developmental Biology, S0012-1606:30355-30359.
A&SSmith, Jeramiah JPublicationGawriluk TR, Simkin, J, Thompson KL, Biswas SK, Clare-Salzler Z, Kimani JM, Kiama SG, Smith JJ, Ezenwa VO, & Seifert AW (2016) Comparative analysis of ear hole closure identifies epimorphic regeneration as a discrete trait in mammals. Nature Communications, 7:11164.
A&SSmith, Jeramiah JPublicationBraasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FEG, Sun Y, Hertel J, Beam MJ, Di Palma F, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SMJ, Aken B, Yandell M, Schneider I, Yoder JA, Volff J-N, Meyer A, Amemiya CT, Venkatesh B, Holland PWH, Guiguen Y, Bobe J, Shubin NH, Alföldi J, Lindblad-Toh K, Postlethwait JH (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics, 48:427-437.
CoMVoss, Stephen RPublication

Timoshevskiy VA, Herdy JR, Keinath MC, Smith JJ* (2016) Cellular and molecular features of developmentally programmed genome rearrangement in a vertebrate (sea lamprey: Petromyzon marinus). PLoS Genetics, 12:e1006103.

CoMVoss, Stephen RPublicationBryant SR, Herdy JR, Amemiya CT, Smith JJ* (2016) Characterization of somatically-eliminated genes during development: Lamprey (Petromyzon marinus). Molecular Biology and Evolution, 33:2337-2344.
CoMVoss, Stephen RPublicationKeinath MC, Voss SR, Tsonis PA, Smith JJ* (2016) A linkage map for the newt Notophthalmus viridescens: Insights in vertebrate genome and chromosome evolution. Developmental Biology, S0012-1606:30355-30359.
CoMVoss, Stephen RPublicationGawriluk TR, Simkin, J, Thompson KL, Biswas SK, Clare-Salzler Z, Kimani JM, Kiama SG, Smith JJ, Ezenwa VO, & Seifert AW (2016) Comparative analysis of ear hole closure identifies epimorphic regeneration as a discrete trait in mammals. Nature Communications, 7:11164.
CoMVoss, Stephen RPublicationBraasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FEG, Sun Y, Hertel J, Beam MJ, Di Palma F, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SMJ, Aken B, Yandell M, Schneider I, Yoder JA, Volff J-N, Meyer A, Amemiya CT, Venkatesh B, Holland PWH, Guiguen Y, Bobe J, Shubin NH, Alföldi J, Lindblad-Toh K, Postlethwait JH (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics, 48:427-437.
A&SWeisrock, DavidPublication

Nunziata SO, Wallenhorst P, Barrett MA, Junge RE, Yoder AD, Weisrock DW. 2016. Population and conservation genetics in an endangered lemur, Indri indri, across three forest reserves in Madagascar. International Journal of Primatology, 37:688-702.

A&SWeisrock, DavidPublicationHime PM, Hotaling S, Grewelle RE, O'Neill EM, Voss SR, Shaffer HB, Weisrock DW. The influence of locus number and information content on species delimitation: an empirical test case in an endangered Mexican salamander. Molecular Ecology, 25:5959-5974.
A&SWeisrock, DavidPublicationYoder AD, Campbell CR, Blanco M, Ganzhorn JU, Goodman SM, Hunnicutt KE, Larsen PA, Kappeler PM, Rasoloarison RM, Ralison JM, Swofford D, Weisrock DW. 2016. Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past. Proceedings of the National Academy of Sciences USA, 113:8049-8056.
A&SWeisrock, DavidPublicationHotaling S, Foley M, Lawrence NM, Bocanegra J, Blanco MB, Rasoloarison R, Kappeler PM, Barrett MA, Yoder AD, Weisrock DW. 2016. Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs. Molecular Ecology, 25:2029-2045."
A&SYang, Dong-ShengPublication

Hewage, W. Ruchira Silva, Wenjin Cao, and D. –S. Yang, “La-Activated Bicyclo-oligomerization of Acetylene to Naphthalene”, J. Am. Chem. Soc., 138, 2468-2471 (2016).

A&SYang, Dong-ShengPublicationS. Kumari, W. Cao, Y. Zhang, M. Roudjane, and D. –S. Yang, “Spectroscopic Characterization of Lanthanum-Mediated Dehydrogenation and C-C Bond Coupling of Ethylene”, J. Phys. Chem. A 120, 4482-4489 (2016).
A&SYang, Dong-ShengPublicationY. Zhang, M. W. Schmidt, S. Kumari, M. S. Gordon, and D. –S. Yang, “Threshold Ionization and Spin-Orbit Coupling of Ceracyclopropene Formed by Ethylene Dehydrogenation” (Mark S. Gordon Festschrift), J. Phys. Chem. A 120, 6963-6969 (2016).
CoPZhan, Chang-GuoPublication

Zhang Y, Huang X, Han K, Zheng F, Zhan CG ""Free energy profiles of cocaine esterase-cocaine binding process by molecular dynamics and potential of mean force simulations", Chem Biol Interact. 2016 Nov 25;259(Pt B):142-147.

CoPZhan, Chang-GuoPublicationYao J, Yuan Y, Zheng F, Zhan CG. ""Unexpected Reaction Pathway for butyrylcholinesterase-catalyzed inactivation of ""hunger hormone"" ghrelin"", Sci Rep. 2016 Feb 29;6:22322. doi: 10.1038/srep22322
CoPZhan, Chang-GuoPublicationYao Y, Liu J, Zheng F, Zhan CG “Reaction Pathway for Cocaine Hydrolase-Catalyzed Hydrolysis of (+)-Cocaine”, Theor Chem Acc. 2016 Jan;135(1). pii: 15. doi: 10.1007/s00214-015-178"




















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